Calb021242.1
Basic Information
- Insect
- Cyclophora albipunctata
- Gene Symbol
- -
- Assembly
- GCA_963082685.1
- Location
- OY720140.1:3560639-3561763[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-11 1.1e-08 35.1 0.2 3 39 15 51 13 57 0.86 2 2 2.7 1e+03 -0.0 0.0 28 42 244 259 243 261 0.87
Sequence Information
- Coding Sequence
- atGGAACCTCCATATAAAAAACGTCGAGGACTTTGGTCGCTTGAGCAATTACGAGCTGCAATGACTGCTGTTCAAGAAGGACTGATGTCCCAACGTGCGGCGGCTGCGCAATACTCTATTCCCAGAAGAACTTTGGTAAACCACTTGAAGTCTGGAAAAGTGGAAAAACAAATAGGACGTCGAACAGTTTTAACCAAAGAGCAAGAAGATGATTTGACGGCGAGAATCAAAAGGCTTGCCTCCATAGGATTTCCTTTAACGCCAAATGTTATTCGTCGTCAAGCTTATGTGTTTTGCGAAAAACACCATATTTCAAACAATTTTAGTGCAATAGCAAGGCGCGCTGGTAAGGACtggttaaagttatttttaaaacgacATCCTGATATATCAAAACGCAAGGTTCAAATCTTAAATCCAGGAAGGGCGCAAAAAGTCAACAAACCTATTGTTATGCAACATTTTTCTGaatacaagaaaatatatgaagaGCTAGATATTGGACAACATCCACAGCGTTTATACAACATGGATGAAAAAGGCTGCCGCCTCACCATTCACAATCAACCAACAGTATTGGCCCAAAAAGGTATTAAAAGAGTGCATATGGTTGCTCCAGAGCACGCAGAGAATGTTACTGTGGCTTGTTGTGTAAATGCATTAGGTAGTCCAATTCCCCCAATGATATTATTCAAGGGCAAAAGGTTGAAACCAGAATTCAACGATAATTTGCCTGCAGGATCCCTTGTGAAAATGGCAAAGAAAGGCAGCATGACTTCGACACTGTTTGTAGATTTCATACATCACTtgggaaaatataaatctgCCGGTCGGTGTCTTCTGGTTTTTGATGGCGCTTCATGTCATTTAGATTATGATATTGTTGATGCAGCAGAGCAAAACAATATTGTACTGTACTGCTTGCCATCAAATACTACACATGAGCTTCAGCCTTTAGATAAAACCGTCAACAAATCGTTTGAACACCACTGGGATGAAGAAACCTTACGTTATTTGTATCAAAACCCGGAGAAGAAAATAACGAAAGCGAGATTTAACACGATTTTTACCAAAGTGTGGGCGAAATGTATGACTCTTGAAAATATAGTAAGTAAATGGTTTTAG
- Protein Sequence
- MEPPYKKRRGLWSLEQLRAAMTAVQEGLMSQRAAAAQYSIPRRTLVNHLKSGKVEKQIGRRTVLTKEQEDDLTARIKRLASIGFPLTPNVIRRQAYVFCEKHHISNNFSAIARRAGKDWLKLFLKRHPDISKRKVQILNPGRAQKVNKPIVMQHFSEYKKIYEELDIGQHPQRLYNMDEKGCRLTIHNQPTVLAQKGIKRVHMVAPEHAENVTVACCVNALGSPIPPMILFKGKRLKPEFNDNLPAGSLVKMAKKGSMTSTLFVDFIHHLGKYKSAGRCLLVFDGASCHLDYDIVDAAEQNNIVLYCLPSNTTHELQPLDKTVNKSFEHHWDEETLRYLYQNPEKKITKARFNTIFTKVWAKCMTLENIVSKWF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01156333; iTF_01564558; iTF_01154961;
- 90% Identity
- -
- 80% Identity
- -