Pmne021163.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000080.1:26431924-26435840[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-08 4.8e-06 28.1 0.1 2 43 32 73 31 74 0.92
Sequence Information
- Coding Sequence
- ATGCAAGCACTGATATTTGACGTTAGAAATAGGAAGGGGACGatgccAAATAAATACCAAAGAAAAGCATGCAGCTCACGAGGGAACTGGAGTGAAGAGCCACTTAAGGCGGCCATGGATGCTGTTAAAAAAGGTGAAATGACTATCTACGCAGCTTCAATAACCTATCAAGTACCAAGGAAGACCCTCGAAAGGCGATACAAGAAAAATAATGACAAAAAAGGACCAATGGGACCATCCTCTATATTCGGCGAAAAAAATGAGAAGAAACTCGCTAACCATATTATAACTATGCAAAAAAATGGTTTCCCATTGACTATTGATGATGTCAGAAAGATTGCGTACCAGTTCGCGGAGCAATTGAATTTGAATCACAGATTTAATAGAGAAACTGAGAAAGCAGGATATGACTGGTTGCAAGGTTTTTTACGAAGAAACCACGATATTACATTAAGAAAGTCAGAAGGAGTATCTTTAGCTAGATCAACTGCTATGAATAAACTGGAGGTTGACGCTTACTTTGAGCTTCTTGAAAGCATATTGACAGTAGACGATGGTGTGTTGAAACCGAGTTGTATCTTCAACATGGACGAGACTGgtcttcagcttaataatcgacCAGGGCATGTTCTAGCTGAAAAGGGTTCTAAGGCTGTATCTACAGTTACTTCGACTGAAAAGGGAGAAACGATTACAGTTATAGCATGCTGCAATGCTGAAGATTTATTTATTGAATGGTTGAAAACACATTTTGTTCCGAGGAAACCAGCTGGAAGAGTACTTCTTTTACTAGATGGTCATTCAACTCACTGTAATTCTGTGGAAATACTGGAATATGCAAATGACAATGACATCAACTTACTTTCAATGCCAAGCCACACGTCTCACTACCTCCAACCACTAGATCGTACGGTGTTTAAATCACTGAAGACTCATTTTTACGAGCAGTGTCGACTTTGGCTAAAACAAAATCCTGGTCGTCGTATAACTCGATTATCATTTGGAAGATTGCTTAATAAGGCGTGGGGAAAGGCAGCTTCTGCAGAGAATGCAATTGCGGGTTTTAAAGCTACAGGTGTCCACCCCTTCAACCCATCTGCAATTCCCGACTACGCGTTTACCCAAGAATTGACACAGCAAGTGTCTAAATCTCAAAATGAGTGTACAGCCACTGTTATGGTCGAAGAGCAAGAAGAAAATACTAGTAACATAGCTTCTGCTAATCTGGAACCAGTTCCAAATACTTTCGAAGTGCGACAAGACATATCACTTGCAATCGCTGAGCCAAATAGCTCTGTTGAGCGAATAGTTTTAAACGCAAGTCCTGAGATGATTACAAGAAGGCCTAAAAAATTATTTGCTACTGCTTCAGcagcagtaattaaaaaaatgtcagaACAATTCCCTCCAAGAAGCGATTTGCCAGATCAGACTCCAACACGTATTTTAAAGCAAATATCGCCAGTTccacaaaaaattattgaagtaCGCAAACGTGCTAAACAGGTAGGCATGCTTTTAACCTCAGAGAATCACATCAAAACAAGAAAATTTAAGGAAGCGCTTAAAAAAAATAGGGAACAAAAAAATTTCGAAAAAGACgttaaaaaggaaagaaaaattgAGATAAAACCAATAAAACGAGCACCAAGAAAGAGAAAATCATTAAGAAAGTTATCTGAAAGTAGTGATGAGGATGAAGAACTAATATTATGTAATTCGTCTGACGAAGAAGATGGAAACAGAGAATTGGATAACTGTGTAGGTTGTGGAGAAAATTATTACGAAACGCAACTCATCGAAGATTGGATTCAATGCGTTATATGCCAACTGTGGGTACATGAAAATTGCACCGAATTCGATGATAAGTGTTCATCATGTGGACAGAAAAAGAAGAATGAGCTGAGGCTCAAAAAATTAAAGGGAAAAAGTGATTAA
- Protein Sequence
- MQALIFDVRNRKGTMPNKYQRKACSSRGNWSEEPLKAAMDAVKKGEMTIYAASITYQVPRKTLERRYKKNNDKKGPMGPSSIFGEKNEKKLANHIITMQKNGFPLTIDDVRKIAYQFAEQLNLNHRFNRETEKAGYDWLQGFLRRNHDITLRKSEGVSLARSTAMNKLEVDAYFELLESILTVDDGVLKPSCIFNMDETGLQLNNRPGHVLAEKGSKAVSTVTSTEKGETITVIACCNAEDLFIEWLKTHFVPRKPAGRVLLLLDGHSTHCNSVEILEYANDNDINLLSMPSHTSHYLQPLDRTVFKSLKTHFYEQCRLWLKQNPGRRITRLSFGRLLNKAWGKAASAENAIAGFKATGVHPFNPSAIPDYAFTQELTQQVSKSQNECTATVMVEEQEENTSNIASANLEPVPNTFEVRQDISLAIAEPNSSVERIVLNASPEMITRRPKKLFATASAAVIKKMSEQFPPRSDLPDQTPTRILKQISPVPQKIIEVRKRAKQVGMLLTSENHIKTRKFKEALKKNREQKNFEKDVKKERKIEIKPIKRAPRKRKSLRKLSESSDEDEELILCNSSDEEDGNRELDNCVGCGENYYETQLIEDWIQCVICQLWVHENCTEFDDKCSSCGQKKKNELRLKKLKGKSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01156297;
- 90% Identity
- -
- 80% Identity
- -