Pmne045774.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- TIGD6
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000093.1:35623451-35625466[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.5e-09 1.2e-06 30.1 0.1 1 43 17 59 17 60 0.93
Sequence Information
- Coding Sequence
- atgccAAATAAATACCAAAGAAAAGCATGCAGCTCACGAGGGAACTGGAGTGAAGAGTCACTTAAGGCGGCCATGGATGCTGTTAAAAAAGGTGAAATGACTATCTACGCAGCTTCAATAACCTATCAAGTACCAAGGAAGACCCTCGAAAGGCGATACAAGAAAAATAATGACAAAAAAGGACCAATGGGACCATCCTCTATATTCGGCGAAAAAAATGAGAAGAAACTCGCTAACCATATTAAAACTATGCAAAAAAATGGTTTCCCATTGACTATTGATGACGTCAGAAAGATTGCGTACCAGTTCGCGAAGCAATTGAATTTGAATCACAGATTTAATAGAGAAACTGAGAAAGCAGGATATGACTGGTTGCAAGGTTTTTTACGAAGAAACCACGATATTACATTAAGAAAGTCAGAAGGAGTATCTTTAGCTAGATCAACTGCTATGAATAAACTAGAGGTTGACGCTTACTTTGAGCTTCTTGAAAGGATATTGACAGTAGACGATGGTGTGTTGAAACCGAGTTGTATCTTCAACATGGACGAGACTGgtcttcagcttaataatcgacCAGGGCATGTTCTAGCTGAAAAGGGTTCTAAGGCTGTATCTACAGTTACTTCGACTGAAAAGGGAGAAACGATTACAGTTATAGCCTGCTGCAATGCTGAAGGTACATTTTTACCACCTGCCTGTATCATGAAAGGCAAAAACAAAAAACCTGAGTTTGAGGATGGGATGCCACCGGGATCGAAACTTTTCATGTCCCCAAAATCAGCGTACATTACCTCAGATTTATTTATTGAATGGTTGAAAACACATTTTGTTCCGAGGAAACCAGCTGGAAGAGTACTTCTTTTACTAGATGGTCATTCAACTCACTGTAATTCTGTGGAAATGCTGGAATATGCAAATGACAATGACATCAACTTACTTTCAATGCCAAGCCACACGTCTCACTACCTCCAACCACTAGATCGTACGGTGTTTAAATCACTGAAGACTCATTTTTACGAGCAGTGTCGACTTTGGCTAAAACAAAATCCTGGTCGTCGTATAACACGATTATCATTTGGAAGATTGCTTAATAAGGCGTGGGGAAAGGCAGCTTCTGCAGAGAATGCAATTGCGGGTTTTAAAGCTACAGGTGTCCACCCCTTCAATCCATCTGCAATTCCCGACTACGCGTTTACCCAAGAATTGACAAAGCAAATGTCTAAATCTCAAAATGAGTGTACAGCCACTGTTATGGTCGAGGAGCAAGAAGAAAATACTTGTAACATAGCTTCTGCTAATCTGGAACCAGTTCCAAATACTTTCGAAGTGCGACAAGACATATCACTTGCAATCGCTGAGCCAAATAGCTCTGTTGAGCGAAAAGTTTTAAACGCAAGTCCTGAGATGATTACAAGAAGGCCTAAAAAATTATTTGCTACTGCTTCAGcagcagtaattaaaaaaatgtcagaACAATTCCCTCCAAGAAGCGATTTGCCAGATCAGACTCCAACACGTATTTTAAAGCAAATATCGCCAGTTccacaaaaaattattgaagtaCGCAAACGTGCTAAACAGGTAGGCATGCTTTTAACCTCAGAGAATCACATCAAAACAAGAAAATTTAAGGAAGCGCTTAAAAAAAATAGGGAACAAAAAAATTTCGAAAAAGACgttaaaaaggaaagaaaaattgAGATAAAACCAATAAAACGAGCACCAAGAAAGAGAAAATCATTAAGAAAGTTATCTGAAAGTAGTGATGAGGATGAAGAACTAATATTATGTAATTCGTCTGATGAAGAAGATGGAAACAGAGAATTGGATAACTGTGTAGGTTGTGGAGAAAATTATTACGAAACGCAACTCATCGAAGATTGGATTCAATGCGTTATATGCCAACTGTGGGTACATGAAAATTGCACCGAATTCGATGATAAGTGTTCATCATGTGGACAGAAAAAGAAGAATGAGCTGAGGCTCAAAAACTTAAAGGGAAAAAGTGATTAA
- Protein Sequence
- MPNKYQRKACSSRGNWSEESLKAAMDAVKKGEMTIYAASITYQVPRKTLERRYKKNNDKKGPMGPSSIFGEKNEKKLANHIKTMQKNGFPLTIDDVRKIAYQFAKQLNLNHRFNRETEKAGYDWLQGFLRRNHDITLRKSEGVSLARSTAMNKLEVDAYFELLERILTVDDGVLKPSCIFNMDETGLQLNNRPGHVLAEKGSKAVSTVTSTEKGETITVIACCNAEGTFLPPACIMKGKNKKPEFEDGMPPGSKLFMSPKSAYITSDLFIEWLKTHFVPRKPAGRVLLLLDGHSTHCNSVEMLEYANDNDINLLSMPSHTSHYLQPLDRTVFKSLKTHFYEQCRLWLKQNPGRRITRLSFGRLLNKAWGKAASAENAIAGFKATGVHPFNPSAIPDYAFTQELTKQMSKSQNECTATVMVEEQEENTCNIASANLEPVPNTFEVRQDISLAIAEPNSSVERKVLNASPEMITRRPKKLFATASAAVIKKMSEQFPPRSDLPDQTPTRILKQISPVPQKIIEVRKRAKQVGMLLTSENHIKTRKFKEALKKNREQKNFEKDVKKERKIEIKPIKRAPRKRKSLRKLSESSDEDEELILCNSSDEEDGNRELDNCVGCGENYYETQLIEDWIQCVICQLWVHENCTEFDDKCSSCGQKKKNELRLKNLKGKSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01156297;
- 90% Identity
- iTF_01156275;
- 80% Identity
- -