Pmne048342.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000095.1:1404799-1406616[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-09 1.1e-06 30.2 0.0 3 43 16 56 15 58 0.88
Sequence Information
- Coding Sequence
- ATGCCTCGAAATTACATACGAAAGACTGAACCAAAATACCAAATTGAAGATCTTCGCCATGCAATCGAAGATGTCAAAAGTAAAAAGCTCACACTGGGCCAAGCTGCTACCAAATACTCAGTACCAAAAACAACATTATTTAAACAAGTAAAGCAAAACGAATTTAAGATGCCAAAAAAAGGTCGATATACTGTATTTAATAAAGAACAAGAAGACCAGCTAGAAAAATACATACTCAATTGCTGCAAGTCTTTTTATGGTATAACACCAAGTTCATTACGTAGAATTGCCTTTCGATTTGCTGAAGCTAACAAACTGAAACACAATTTCAACACAGAAACCCAGCTGGCTGGCAAAGACTGGTACTATGGCTTTATGTCTCGACATACTTCCATCAGTTTACGGATTCCAGAAGCTACTTCAATTAATAGAATTTCAGCTTTTAACGCCATTGAAGTAAATCTGTTTTTTGATCAATTAAAAAcgatacaaacaaaatacaataTACCTGGTCAtcgtatttttaatattgatgaaaCCGGCTTTAGCACAGTACAAAAGAATTATAAGATTTTGGCTCCAAAAGGTTTAAAGCAGATAGCAAAAGCTACAAGCGGAGAACGCGGTGTTACAACAACAGTAGTTTGTGCTGTCAGCGCTAGTGGCATATATGTACCAcccatgtttatttttaaaagaaagagaATGAGCGAACTGTTACTTAAAGGCTGTAACAGTGACATGATTGCCACTGTTTCTGATTCCGGTTGGATAAATGAGTCCATATTTCTTGACTACTTGCGACACTTCATTTCTTTCGTGAAACCTACCAAAGAAGAACCAGTATTAATAATACTTGACAATCACGAAAGTCATATCAGCCTGGGAGCATACGAACTTTTCCGAGAATACAACCTGCAAGTTCTTTCCTTGCCACCCCATGTATCTCACAAAATGCAGCCACTGGATCTTACAATCTTCAGTTCACTGAAGATGGCGTACAATAAGGAATGTGAGCTATACATGGTTAACAATCCTGGCAAACGAATAAGCCAGTATGAGGTTGGAGAACTTTTTACAAAAGCGTACAACAAAACAGCTAACATATGCAAGGCTCTCAGTGGATTTAGAGCCGCTGGAATTCATCCTATTGATCCTGACAAATTTAAAGACAGCTTTGAAAATAAGATATTTGACCAATCTCACACCAGTCAGACTCAAGAGTGCGATGTTCATGAAACTGAAGCTGAGCAAAGTTTGAATGAGTCCGTTAACACTGTCAGCCAGAGTCAAACACCAACACATGATTCCACTTCTATTCCTGAAAATGACAACGATTTGAGCGTAACCATTAATATTCCTCCTCCTTCCACACCTGTGCCCCTTGCCGAAATTATTAATGTGCCTGTTATTCCTACAACAACAACCACTTCTAAGGGACAGAATAAGAAGCATTCTCAGATTTTATCCAGCACACCAATAAAAATTCAATTAGAGGAAAAACTGAAAAGACAATGTGAGCGAAAAgctaaaaaagaaaaagttccaattaaaaaaccagaaaaaaacattaaaatcatACAAAAGAAGCCACAAGTCAGGGGTAAGGGAATCAGAAATTTGAAGAAAGCTTTACAAGGAAATGAAAACGAAGAGGAGTTTTACTGTATAATATGCAACGAAAAGTATGAATCCCCACCGATAGAAGATTGGATCATGTGCGCCATTTGTAAACTTTGGGCTCATGAAAAATGTACTGCCGGAGAGACTAGTAAAGGTTACGTGTGTGATATGTGCCACACAAATAAGTTGTTTTAG
- Protein Sequence
- MPRNYIRKTEPKYQIEDLRHAIEDVKSKKLTLGQAATKYSVPKTTLFKQVKQNEFKMPKKGRYTVFNKEQEDQLEKYILNCCKSFYGITPSSLRRIAFRFAEANKLKHNFNTETQLAGKDWYYGFMSRHTSISLRIPEATSINRISAFNAIEVNLFFDQLKTIQTKYNIPGHRIFNIDETGFSTVQKNYKILAPKGLKQIAKATSGERGVTTTVVCAVSASGIYVPPMFIFKRKRMSELLLKGCNSDMIATVSDSGWINESIFLDYLRHFISFVKPTKEEPVLIILDNHESHISLGAYELFREYNLQVLSLPPHVSHKMQPLDLTIFSSLKMAYNKECELYMVNNPGKRISQYEVGELFTKAYNKTANICKALSGFRAAGIHPIDPDKFKDSFENKIFDQSHTSQTQECDVHETEAEQSLNESVNTVSQSQTPTHDSTSIPENDNDLSVTINIPPPSTPVPLAEIINVPVIPTTTTTSKGQNKKHSQILSSTPIKIQLEEKLKRQCERKAKKEKVPIKKPEKNIKIIQKKPQVRGKGIRNLKKALQGNENEEEFYCIICNEKYESPPIEDWIMCAICKLWAHEKCTAGETSKGYVCDMCHTNKLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01156255; iTF_01152034; iTF_01152035; iTF_01152036; iTF_01152038; iTF_01152051; iTF_00924548; iTF_00924547; iTF_01409007; iTF_00985956; iTF_00206932; iTF_01303253; iTF_00174098; iTF_00174099; iTF_00666452; iTF_00666453; iTF_01090656; iTF_00060136; iTF_00939466; iTF_00939474; iTF_00174101;
- 90% Identity
- iTF_01156255;
- 80% Identity
- -