Pmne023968.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000082.1:5444095-5457232[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0048 1.6 10.4 0.0 1 34 162 195 162 205 0.92 2 2 4.7e-10 1.6e-07 32.9 0.0 2 41 235 274 234 278 0.86
Sequence Information
- Coding Sequence
- ATGGAGCACCTCGTCAAAAACCGCCTAGAGTGGTTACTAGAAAATAGAGGCATCTTGCCTAAAAGCCAGTTTGGTTTTAGAAAGGGTTTGAGTACCTCTGACAGCCTCAGCCTTTTGATTTCCAATTGGCAGCAACCAGAGGACAACATGAAGTACATGGATATGATATGCATCTCTTGCATCTCTCGGTTACGTGATGCACTTGCTTTCAAAAGAGAAGTTTTAGTGAGTGAAGAGGTGCTGCGTGAAAATCAAGATGAAATATTTCTTCATACTACAATGAAAGTGGAGAAAAATTTGgaagaggaagaagaagaagtcaAGTTTAGTGATGTGGAATACTTAGAGATCCCAGACAGTTTAAACAAAGATGAATTATGTGAAGAATATTTGTCAGATGATAACTCTCTGCTAGTAGAACGTACAATAAAAAGGTCAAAAAAGCTCACAAATGAAGAGGGGAACAAAACGTACAAGCAGTATACTGACGAGGAACTACAAATGGCCAATGATGCAGTCCAGAACAATGAAATGTCACATACAGAACCGGCTGAGCTTTTTAAAGTGCCCACGAAAACTATCTCTGCTACTAGATCCGCAATATTACAGACAAAGAAAAGGATTCCAGAAGAAAATCGTAAAAGAAAATGGCCGAAGAAACAACCAAAGCAAGACCGAAAGAAAACATACAAGCAGTATACTGAAAAGACACTGAGAATGGCCATTGATGCTGTACAGAATGAAGGGATGTCACGTAACAAAGCGGCAGAGAAGTTTAAGGTGCCTAAGAAGACTCTTGAATTAAGACTTCAGAATGCTATTGCCAAAAAAGAGGAGCCGGATGATGATGATGCATCAAAAATAATAGACCAAGAAAAACACTACAAACTCGTAGAGGAAATTAAATCTATACTCACTTACACAAATGCAATACCATACAAAACAAGATTGTCAAGGTACTACTGTGCATACTGCTCTACATATGGACCAGCTTTTGATGACGCTGATGATTTGAGGACTCACACTAAAACAAAGCATGTCGATGATCGGACTAAAGCCGTAGATCAGATAATGAGACCACACTGGCTTAATGAAGTGTTAAGGATTGATATACACAGTCTCCATTGTACAGTTTGCTGTACAATCCTGCCCACTTGGAACGACATGTTCCGACATCTTGAAGATGTGCATGAGGTTGTTCTAGATGAGACCTACAACAGAGTTATACCTTATATCCTCGCAAGAGAGCTGAAATGCGCTTTATGTGGAGAAGCCTTTCCGAATTACCACATGCTGGACGGACATATGAACACCCATTACAGTAGTTACATTTGCTCAGAATGCGGTGATACTTTCTTATCAGCGAGCCGACTTAAAAGACATGTGGAAGTACACAATACTGGGAAGTTCCCTTGCGAGGTTTGCGGTAAAGAGTACAATTTGAAGAAGTACATGAAGAAGCATTTTGTCATCGCACATGGGCAGAAAGATCGATACAAATGCTTATACTGTCCGGAAAGATTTTCCAGAACATTCCAGAGACATCATCATGTACTTGAAAAGCACAAAGAGATGGTCAAGATTAAAACTTGTGAGATCTGCGGAAAGACATTCGACTGGATGCCCTACTACTCGGCTCACATGAGACGAAAGCATGGGAACGAGAAGAATTACAAATGCAAACAGTGCGACAAAAGTTTCCTTATGAAGTATCAGTTgagggaccatcaagaaaagcaTTTGGAGGAGAGGAACGTTGTTTGTGACGTGTGCAATGAGAGATTTAAAACTAAAGCCGGCTTAGTGCGACACTGTCAGCTGCATCATAACTTTCCAACCGCAAAAAGTCAGGTGGTTAAATAA
- Protein Sequence
- MEHLVKNRLEWLLENRGILPKSQFGFRKGLSTSDSLSLLISNWQQPEDNMKYMDMICISCISRLRDALAFKREVLVSEEVLRENQDEIFLHTTMKVEKNLEEEEEEVKFSDVEYLEIPDSLNKDELCEEYLSDDNSLLVERTIKRSKKLTNEEGNKTYKQYTDEELQMANDAVQNNEMSHTEPAELFKVPTKTISATRSAILQTKKRIPEENRKRKWPKKQPKQDRKKTYKQYTEKTLRMAIDAVQNEGMSRNKAAEKFKVPKKTLELRLQNAIAKKEEPDDDDASKIIDQEKHYKLVEEIKSILTYTNAIPYKTRLSRYYCAYCSTYGPAFDDADDLRTHTKTKHVDDRTKAVDQIMRPHWLNEVLRIDIHSLHCTVCCTILPTWNDMFRHLEDVHEVVLDETYNRVIPYILARELKCALCGEAFPNYHMLDGHMNTHYSSYICSECGDTFLSASRLKRHVEVHNTGKFPCEVCGKEYNLKKYMKKHFVIAHGQKDRYKCLYCPERFSRTFQRHHHVLEKHKEMVKIKTCEICGKTFDWMPYYSAHMRRKHGNEKNYKCKQCDKSFLMKYQLRDHQEKHLEERNVVCDVCNERFKTKAGLVRHCQLHHNFPTAKSQVVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158611;
- 90% Identity
- iTF_01157225;
- 80% Identity
- iTF_01157225;