Pmne023958.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000082.1:5318603-5329205[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-07 7.8e-05 24.3 0.0 1 35 130 165 130 168 0.93 2 2 1.2e-08 4e-06 28.4 0.0 2 40 206 244 205 247 0.91
Sequence Information
- Coding Sequence
- ATGCGATTCCAGTGGCAGCAACCAGACGACAACATGAAGTATATGGATATGATATGCACCTCTTGCATCTCTCGGTTACGTGATGCATTTGCCTTCAAAAGAGAAGTCTTAGTGAGTGAAGAAGTGCTGCGTGAAAATCAAGATGAATtaTTTCTTCATACCACAGTGAAAGTGGAGAAAAATTTAgaagaggaagaagaagaagtcaAGTTTAGTGAAGTGGAATACCTAGAGATCCCAGACAGTTTAAACAAAGAGGAATTATGTGAAGAACAGTTATCAGATGAACAATTGCAGAGTTCAGATAGCCTCCTGGTAGTAAAACGTACAAGAAAGAGGTCAAAAAGGCTCACAAAGGAAGAGAGGAACAAAACATACAAGCAGTACACTGAAGAGGAACTACAAATGGCTGTCGATGCGGTCCAGAACAATGAAATGTCACATACAGAAGCGGCTGAGTTTTTTAAAGTGCCCAGGAAAACTATCTCTGCTAAGATCTGTAATATTACTGACAAAGAAGAGGAACGATCACAGAGTCCAGAAGAAAATCGTAAAAGAAAATGGCCGAAGAAACTACCACATAAAGACAGAAACAGAACATACAAGCAGTATACTGAAAAGGCACTTAGAATGGCCATTGATGCTGTGCAGAATGAAGAGATGTCACGTAGCGAAGCGTCAGCGAAGTTTAAGGTGCCTAAGAAGACTCTAGACTCTAGACTTAGACTTCAGAATTCTATTGCCAAAGACGAGGAACCGGATGATGATGATGCATCAAAAATAATAGACCAAGAAAAACACTACAAACTCAGAGAGGAAATTAAATCTATACTCACCTACACAAACGCTATGCCATACAAATCAAGGTTGTCAAAGTACTACTGTGCATACTGCTCTACAGATGGACCAAGTTTTGATGACCCCGATGATTTGAGGACTCACACTAAAACAAAGCATGTCGATGATCGGACCAAAGGCATAGATCAGATGATGAGACCACACTGGCTTAATGAGGTGTTAAAGATTGATATACACAGTCTTCATTGTACAGTTTGCTATACAATCCTGCCGACTTGGAATGACGCGCTCCGACATCTTGAAGATGTGCACGAGGTTGCTCTAGATGAGGCCTACAACAGAGTTATACCTTATGTCCTTGCAAGGGAACCGAAATGTGCTTTATGTGGAGAAGCCTTTCCGAGTTACCACATACTGGATGGACATATGAACGCTCATTACAGCAGCTACATTTGTTACGAATGTGGTGATACTTTCTTATCAGCAAACCGACTTAATAAACATGTGAAAGTGCACAATATTGGGAGGTTCCCTTGCGAGGTTTGCGGCAAAGTGTACAATTTAAAGAGGTACATGACGAAGCACTTTACCGTGGCACATGGACAGCAGGACCAATACAAATGCTCGTATTGTCCAGAAAGATTCTCCAGACCATTCCAGAGACATCAGCATTTACTTGAAAAACACAAAGAGACGGTCAAGATAAAGACTTGTGAGATCTGCGGAAAGACATTCGACTGGATGCCCTACTACTCAGTTCACATGAGACGAAAGCATGGGAAAGAAAGGAATGCAAACAGTGCAACAAAAGATTCCTTAAGTAGTATGGGGAACTTTGTTTGTGGAGTGTGTAGTGAGAGATTTAAAACTAAAGCCGGTTTAGTGCGACACTCTCACCTGCATTATAACTTTCCAACAGCAAAAAGTCAGACGGTTAAATAA
- Protein Sequence
- MRFQWQQPDDNMKYMDMICTSCISRLRDAFAFKREVLVSEEVLRENQDELFLHTTVKVEKNLEEEEEEVKFSEVEYLEIPDSLNKEELCEEQLSDEQLQSSDSLLVVKRTRKRSKRLTKEERNKTYKQYTEEELQMAVDAVQNNEMSHTEAAEFFKVPRKTISAKICNITDKEEERSQSPEENRKRKWPKKLPHKDRNRTYKQYTEKALRMAIDAVQNEEMSRSEASAKFKVPKKTLDSRLRLQNSIAKDEEPDDDDASKIIDQEKHYKLREEIKSILTYTNAMPYKSRLSKYYCAYCSTDGPSFDDPDDLRTHTKTKHVDDRTKGIDQMMRPHWLNEVLKIDIHSLHCTVCYTILPTWNDALRHLEDVHEVALDEAYNRVIPYVLAREPKCALCGEAFPSYHILDGHMNAHYSSYICYECGDTFLSANRLNKHVKVHNIGRFPCEVCGKVYNLKRYMTKHFTVAHGQQDQYKCSYCPERFSRPFQRHQHLLEKHKETVKIKTCEICGKTFDWMPYYSVHMRRKHGKERNANSATKDSLSSMGNFVCGVCSERFKTKAGLVRHSHLHYNFPTAKSQTVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01154935;
- 90% Identity
- iTF_01154935;
- 80% Identity
- iTF_01157240;