Pmne025881.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- jarid2b
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000082.1:44416973-44463631[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2 2.4e+04 -2.2 0.0 52 76 86 109 73 113 0.63 2 2 4.9e-19 2.2e-15 58.7 0.0 6 89 475 555 471 555 0.92
Sequence Information
- Coding Sequence
- ATGCATTGGCCAGCACGAAGTCCAGACCTTAACCCAATAGAACATCTCTGGGATGACCTAAAACGGCGCGTGCGAGCTCGAGATCCAGCTCCAACCGTACCGTACCGCATCTTGGAGCTCTTGAAGACCAATGAAGTAAGTCTTGAACTACCAACTGGTCAAGGCGGCAACGGAGATATCGAAATTGTAGAAGATAGCGTAGATTGGATCAGTACTGAGGGAGAACAAAATGTTGATAATACCGGGATTAACAACGCATTAAAGCGAAAACAAGTTGCAAATCGATTTAAAGTTCCTCAGCCTCCAAAGCGGAAACAATCATCACGGCTTCAAACAGTTGCAGGCCGTCAAAGAAACAGTAATAAGTCTGAAATATCTAGTACGAGCGCTTCTCAGTGTATATCCAGTCGTTTTAACACCTTTAGTGACATATTGAATTGCCTACCGAAAGTATTAAATAACCGTTGTAAGGCCTGCGTGTATTGTACTGTTGTGGATAGAGCATTGCAAATCTGTAAAATAACAAAACTTCTTAATATAGACACGTCTGTTCCTTTACAAACAGAAGACAGTTATGAGTTTAGTGCTGACAGCCACTCTAATTCATTTCAAGGGACATCatatattaatacacgtaaaggACGTTCCAGACAAGCGTTTAGAAATCAAAGTGTGAACACAGGCAATATGGAAAGTGCAAATATGCCCTCACAATGTCCACCTTCACTACCTCGTCCACAATCAAAAGATCAACTTCCATCTCCTCGCCGTCCACTCCCATTTAAAAGTTTATATTTGGATTACTCGGAAAAAAGCAATAACATCATTGAGTTCAAATTGTCTTGGCAAGagcataaaaaaaaatttacagtgAGTGCAAACAAAATTCCTAGATCTCCAGATATAGTAATAACAAAGTTAAATTCAGCCACagattctaatattttttattcaattcttGGACAAATGGATAAACTACCTCTCAATACACTGGTTAGAAGTTTATCGAATGCAATAGAACAGACGAGTCATTCAGTAATTAATAACGACGACGGTGCGATTCCGAGTACGTCGAGAGGACCTAATCCAGAACCAGTTGTTACAGTGCAGACTTCAAACAATTTTGATACTAGAGATAGAGGAGGCCATCAAGCCGAGAAACCAAAAGCAGCCTTTCCCCGTCATAATAGCAAGGCTCAACAAGTCGACGCACCAATTTTTTACCCAACTGAGGCTCAGTTTACgGATCCGATTGCATACTTCAATGAAATCAAGCCAACCGCAGCTAAATTCGGATTATGTAAGATTGTAGCACCAGAGACATTCAAATCGCAGTGTGTTTTAAAAGATGAAATGAGATTTGGTGTGACTAACCAATATATTTCACGTTTTTATACCCGTTGGGGTCCGGCTTCGAGAGAAATGTGCGCTATGAAAGCATACTTAGCTACGCAAAGTGTAGTATTCACGAGATCACCATTGCTCGACGGCATCGAAGTAAGTCTTCCAAAATTATACGAACTCGTGCAACGGTGCGGTGGTCTCAAGAAAGTCATAGAAAAGAAACGTTGGAGTCGTGTAGCCGAAGAAATGCAACTTACCAAATCTCCGAACATTGAGAAGAAATTAGATTtaatatatgttaaatatattttacccTATGATACACTGTCTAACAAAGAACGTCTAGAAATGATGAAAGTCGTAGAAGTTTACtggaataagaaaaataaaaggaTGCTTGATAGAGCATTAAATCCCTTGCACAGTCAAAAACGTATTTTGGGTGAATCGGAATCGTCTGAAGAAGAAGATGTCGATGATTTGAATGTTACTGGAGCCTTCTTTGGGTTCGACGATTGTATTCTCCCAGGCAGACATATGAATTTGGCTACATTCAAAAAGGTCGCGAATAAAGTAATGAAGACATATTTTACCACACCTAACCCTACTACACAGGAAGTAGAGAACGCATATTGGAAATTTGTCCTTCTATCCAAAGATCACGTGTGTATCAATACTGCGTCAATAGATACTGGAGTAAAAGGATATGGATTTACAAAAAATCATCGAGATATTATTGGGAAACACCCGTGGAACCTGaaggTGTTAAGTGGTAATGCCGGCAACGCTCTGAGATATTTGGGTTCCGTAATGGGTGTCACTGTACCGACACTACACCTTGGCATGGTGTTTTCAACTAGCTGCTGGCACCGAGATCCCCACGGCCTGCCTTGGATTGAATATATGCACTCTGGACCCGCCAAGATTTGgtacGGGATTCCTGATGAACAGAGTACAAACTTCCGAAGAGCGGTCGAGTTGCTCTGCCCTACATTATGTCAAAATAAGTCTATTTGGCTGTCATCTGATTTAGTCATGATCCCACCCAATCTACTCTTAGAGCACAATGTGTCTCTTTCAAGGGTGGAACAAAAGCCTGGAGAATTCATTTTGGTCTTCCCCAATGCTTATTCTTGCTCAATATCTACAGGATACACTGTATCGGAGAGTGTGTACTTTGCCACTAACCCATGGCTGAAGACTATCCATCAAGTTTTTCAGgAGTTGAAAGAAAGCTGCGAACCAACGATGTTTGCCCTAGAACACTTCTTATTGGCGGCTGCACGAGACCCTCGCTCTCCTCTGTCGATTCTACCGGAAATATATTCCAGCCTCAGTATCATTATCAGAGAGGAACTCGACAACCGTGCTGCCATAATGCGCTTCAACGTTCCGATAAAGTATTCAAATAAGAGTCGCCACTGCAAACCGTCCCGTAAGCGACCAGCGAGAGCGTGGAATGTTCGCGAACAAGACGAGTGCGAAATCTGCCGCGCTACATTATATCTCTCCAGGGTACGAGGACtaccatcaaaaaaaaaaaatgtttgtctcCAACACGGCCGACGTTTACTAGAGAATTCTCGGCAAAGCGAGCGAGAAGCATCAATAGAGATGGACGTCTTTGTTTCGGAACAAGAGTTGGACAATGTTTTACAAGGCGTCCAGAATCGATTAGTCGGCTAA
- Protein Sequence
- MHWPARSPDLNPIEHLWDDLKRRVRARDPAPTVPYRILELLKTNEVSLELPTGQGGNGDIEIVEDSVDWISTEGEQNVDNTGINNALKRKQVANRFKVPQPPKRKQSSRLQTVAGRQRNSNKSEISSTSASQCISSRFNTFSDILNCLPKVLNNRCKACVYCTVVDRALQICKITKLLNIDTSVPLQTEDSYEFSADSHSNSFQGTSYINTRKGRSRQAFRNQSVNTGNMESANMPSQCPPSLPRPQSKDQLPSPRRPLPFKSLYLDYSEKSNNIIEFKLSWQEHKKKFTVSANKIPRSPDIVITKLNSATDSNIFYSILGQMDKLPLNTLVRSLSNAIEQTSHSVINNDDGAIPSTSRGPNPEPVVTVQTSNNFDTRDRGGHQAEKPKAAFPRHNSKAQQVDAPIFYPTEAQFTDPIAYFNEIKPTAAKFGLCKIVAPETFKSQCVLKDEMRFGVTNQYISRFYTRWGPASREMCAMKAYLATQSVVFTRSPLLDGIEVSLPKLYELVQRCGGLKKVIEKKRWSRVAEEMQLTKSPNIEKKLDLIYVKYILPYDTLSNKERLEMMKVVEVYWNKKNKRMLDRALNPLHSQKRILGESESSEEEDVDDLNVTGAFFGFDDCILPGRHMNLATFKKVANKVMKTYFTTPNPTTQEVENAYWKFVLLSKDHVCINTASIDTGVKGYGFTKNHRDIIGKHPWNLKVLSGNAGNALRYLGSVMGVTVPTLHLGMVFSTSCWHRDPHGLPWIEYMHSGPAKIWYGIPDEQSTNFRRAVELLCPTLCQNKSIWLSSDLVMIPPNLLLEHNVSLSRVEQKPGEFILVFPNAYSCSISTGYTVSESVYFATNPWLKTIHQVFQELKESCEPTMFALEHFLLAAARDPRSPLSILPEIYSSLSIIIREELDNRAAIMRFNVPIKYSNKSRHCKPSRKRPARAWNVREQDECEICRATLYLSRVRGLPSKKKNVCLQHGRRLLENSRQSEREASIEMDVFVSEQELDNVLQGVQNRLVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01154801;
- 90% Identity
- -
- 80% Identity
- -