Basic Information

Insect: Parnassius glacialis
Gene Symbol: -
Assembly: GCA_033319125.1
Location: JAVANC010000004.1:64686490-64688448[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.081 19 7.8 1.3 1 23 72 94 72 94 0.96

2 16 0.0042 0.96 11.9 0.1 2 23 123 145 122 145 0.96

3 16 0.07 16 8.0 0.5 2 23 166 188 165 188 0.94

4 16 0.00072 0.17 14.3 2.2 2 23 194 216 193 216 0.95

5 16 0.0045 1 11.8 1.7 1 23 221 244 221 244 0.96

6 16 1.5 3.5e+02 3.8 0.1 2 23 247 269 246 269 0.92

7 16 1.3 3e+02 4.0 4.8 2 22 276 296 275 296 0.94

8 16 0.0051 1.2 11.6 0.4 1 23 357 380 357 380 0.90

9 16 1.1 2.6e+02 4.2 0.1 3 23 409 430 407 430 0.90

10 16 0.046 10 8.6 0.2 3 23 454 476 452 476 0.94

11 16 0.00036 0.082 15.2 0.6 3 20 483 500 481 504 0.90

12 16 0.0059 1.4 11.4 0.4 1 23 509 532 509 532 0.97

13 16 0.00031 0.071 15.4 0.2 2 23 538 560 538 560 0.92

14 16 8.6e-05 0.02 17.2 4.7 1 23 564 587 564 587 0.97

15 16 0.0001 0.023 17.0 0.7 2 23 594 615 593 615 0.96

16 16 0.00046 0.11 14.9 1.4 1 23 621 643 621 643 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.081	19	7.8	1.3	1	23	72	94	72	94	0.96
2	16	0.0042	0.96	11.9	0.1	2	23	123	145	122	145	0.96
3	16	0.07	16	8.0	0.5	2	23	166	188	165	188	0.94
4	16	0.00072	0.17	14.3	2.2	2	23	194	216	193	216	0.95
5	16	0.0045	1	11.8	1.7	1	23	221	244	221	244	0.96
6	16	1.5	3.5e+02	3.8	0.1	2	23	247	269	246	269	0.92
7	16	1.3	3e+02	4.0	4.8	2	22	276	296	275	296	0.94
8	16	0.0051	1.2	11.6	0.4	1	23	357	380	357	380	0.90
9	16	1.1	2.6e+02	4.2	0.1	3	23	409	430	407	430	0.90
10	16	0.046	10	8.6	0.2	3	23	454	476	452	476	0.94
11	16	0.00036	0.082	15.2	0.6	3	20	483	500	481	504	0.90
12	16	0.0059	1.4	11.4	0.4	1	23	509	532	509	532	0.97
13	16	0.00031	0.071	15.4	0.2	2	23	538	560	538	560	0.92
14	16	8.6e-05	0.02	17.2	4.7	1	23	564	587	564	587	0.97
15	16	0.0001	0.023	17.0	0.7	2	23	594	615	593	615	0.96
16	16	0.00046	0.11	14.9	1.4	1	23	621	643	621	643	0.97

Sequence Information

Coding Sequence: ATGTTAAATATTTCGAGACATGTTTTACAATTTTTCCATTttagatgtttttatttgaaCGAAATTAGGGTACATTTACAGTTGAGAATTCAAATTTCAGATGTAAAACCCCGGAAACACAAAGGCTGTGAATCGTCATCGATGCGCAGACGGAAAAATCTACAAATTCTATTCAACAATACCTCAGTGATACCGTTCAAATGGCGAGGGAAATATCTCTGCTTCTATTGTAGTAAAGATATAACTGAATACATTGAGCTTCGGAAGCATACGAAGTCGCACGGCAGCTGCTCAATCGGAGACCATTCCCTAAAAGTCCTTAAAGGTGGCCAAAATATGGAAATTAAAATTGACATATCAGATATAAGATGCCACGTATGCGACGAACCGTTCCCAACGATCGCTGAGGTGGTGAATCACCTCAATGTAAAGCATAAGCTGGAATACGACAAAGACGTCGAAATGGCTATAGAGGAATACCAATTAGCCGATCTAAAATGCCTGTCGTGTGAGGAAAAGTTTTCCTATTTCGGTTATTTGGTATCCCACGTAAACAATAATCATCCAAAGAATTGCCTGATATGTGACAATTGCAGCCAAAAATTCAATAAGAAGAGAGACCTATTCTCGCATATGAAAAACTATCACAGAGAAGGCGGATATAGATGCGATTTATGCCCCCAGAAATTTACCTCCTTGAATATCCTAAGGAAACATAGAAATAATCGACATTTGACGAGGTGTAACATTTGTCTGTTGAAACTACCTTCAGCGGCGCTTAAACAGAAACATATGGATCTGGAGCACCCGGATGACGGTTCCCTAAAATGTGATAATTGTTGCAAGGAGTTTCACACAAAACAAGGCTTGAAAATGCATACAAGGAAGTGTAAAGGTGTTGAGGAAGTATTGGAAATAGGCATTAAAAGAGAGGGCTATGAGGCTATGGATGTAGATGACAGCTATGAAGATCTGGTGAAGAGACCTAGCGTGAAACAAATCAGGGAGAACATTGTCATAGTCATTAATATGTCTACGGCGATACcttttaatttttacaaaaacaaatttaattgcTTCTATTGCTCGAAAGATTTCGCAGACTCCGATGCAATGCGTGATCACACGGTCTTAGAACATCCTGTATGCGACGTAAAGCAGAAATGTATTAGGAAATGTAGGGAATCGGTGGCGTGCGTTAAAATCGACATATCGACGCTGGCTTGTAAGGTTTGTTTCCAGTCCATTAGCGAATTAGATCTTCTGATAGACCATTTAATAGATAAGCACAATGCTAATTATGATAAATCTATAACGACATGCTTACAACCCTATAAACTAATTAAAGACCATATGGCGTGTCCAGTTTGTCCCAATGAGGTTTTCAGGTTTTTCGGCACGCTACTCAAACATATGAATAACAGACatacaaacaataatataatttgcGTGTACTGCGGACAGACTTTCAGGCGCGATCAAAATCTTAGAGTCCACATATGGCGGCACCATAGAGACGGTAGGTTTAAATGTAACATTTGCGGCGCCGAATGTAATATACCTTCCCGCTTGTATATGCATATGGCTAAAGTTCACGGTGTAAAAGCGGCGAAGTGTCCGAAGTGTCCTGAATCGTTTGCCACGCAGTATTTGCGGCAAAAACATTTGATCGACGCCCACGAATCTGGTCACAAGTGTTCCTACTGCGGCAAACTGTTCACTCGGAACTCTTTCATGCGGGACCACGTCAGGCGCACCCATTTGAAGGAGAAGAACGTGGAGTGTACGATTTGTAACATGAAGTTCTTTAACAATATTCTCTTGAGGAGGCATATGGTGAAGCACAGTGGTGAGAAAAATTTCAACTGTGACATATGCGGCGAACGGTTTTACTGGAGGAAAAGTCTGCGCACCCACATGACTCGACATAGTAAACACGTCACCACATTACAATTGTAA
Protein Sequence: MLNISRHVLQFFHFRCFYLNEIRVHLQLRIQISDVKPRKHKGCESSSMRRRKNLQILFNNTSVIPFKWRGKYLCFYCSKDITEYIELRKHTKSHGSCSIGDHSLKVLKGGQNMEIKIDISDIRCHVCDEPFPTIAEVVNHLNVKHKLEYDKDVEMAIEEYQLADLKCLSCEEKFSYFGYLVSHVNNNHPKNCLICDNCSQKFNKKRDLFSHMKNYHREGGYRCDLCPQKFTSLNILRKHRNNRHLTRCNICLLKLPSAALKQKHMDLEHPDDGSLKCDNCCKEFHTKQGLKMHTRKCKGVEEVLEIGIKREGYEAMDVDDSYEDLVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFADSDAMRDHTVLEHPVCDVKQKCIRKCRESVACVKIDISTLACKVCFQSISELDLLIDHLIDKHNANYDKSITTCLQPYKLIKDHMACPVCPNEVFRFFGTLLKHMNNRHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKVHGVKAAKCPKCPESFATQYLRQKHLIDAHESGHKCSYCGKLFTRNSFMRDHVRRTHLKEKNVECTICNMKFFNNILLRRHMVKHSGEKNFNCDICGERFYWRKSLRTHMTRHSKHVTTLQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01337920;
90% Identity: iTF_01159909; iTF_01157053; iTF_00923051;
80% Identity: -