Basic Information

Insect: Luehdorfia chinensis
Gene Symbol: -
Assembly: GCA_029286615.1
Location: JAGSMQ010000192.1:1301856-1304920[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0068 0.69 11.2 1.7 1 23 95 117 95 117 0.96

2 16 0.16 16 6.8 0.1 2 23 146 168 145 168 0.95

3 16 0.0074 0.74 11.1 0.7 2 23 189 211 188 211 0.94

4 16 0.00055 0.055 14.6 2.4 3 23 218 239 216 239 0.96

5 16 0.0015 0.15 13.2 1.3 1 23 244 267 244 267 0.96

6 16 0.28 29 6.1 0.5 2 23 270 292 269 292 0.92

7 16 2.8 2.8e+02 2.9 4.2 2 21 299 318 298 319 0.93

8 16 0.0045 0.46 11.7 0.5 1 21 380 400 380 403 0.89

9 16 0.27 27 6.1 0.0 3 23 432 453 430 453 0.91

10 16 0.042 4.3 8.7 0.3 2 23 476 499 475 499 0.95

11 16 0.00032 0.033 15.3 0.6 3 20 506 523 504 527 0.90

12 16 0.0058 0.58 11.4 0.4 1 23 532 555 532 555 0.97

13 16 0.00031 0.032 15.4 0.2 2 23 561 583 561 583 0.92

14 16 8.6e-05 0.0086 17.1 4.7 1 23 587 610 587 610 0.97

15 16 0.0001 0.01 16.9 0.7 2 23 617 638 616 638 0.96

16 16 0.00046 0.047 14.8 1.4 1 23 644 666 644 666 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0068	0.69	11.2	1.7	1	23	95	117	95	117	0.96
2	16	0.16	16	6.8	0.1	2	23	146	168	145	168	0.95
3	16	0.0074	0.74	11.1	0.7	2	23	189	211	188	211	0.94
4	16	0.00055	0.055	14.6	2.4	3	23	218	239	216	239	0.96
5	16	0.0015	0.15	13.2	1.3	1	23	244	267	244	267	0.96
6	16	0.28	29	6.1	0.5	2	23	270	292	269	292	0.92
7	16	2.8	2.8e+02	2.9	4.2	2	21	299	318	298	319	0.93
8	16	0.0045	0.46	11.7	0.5	1	21	380	400	380	403	0.89
9	16	0.27	27	6.1	0.0	3	23	432	453	430	453	0.91
10	16	0.042	4.3	8.7	0.3	2	23	476	499	475	499	0.95
11	16	0.00032	0.033	15.3	0.6	3	20	506	523	504	527	0.90
12	16	0.0058	0.58	11.4	0.4	1	23	532	555	532	555	0.97
13	16	0.00031	0.032	15.4	0.2	2	23	561	583	561	583	0.92
14	16	8.6e-05	0.0086	17.1	4.7	1	23	587	610	587	610	0.97
15	16	0.0001	0.01	16.9	0.7	2	23	617	638	616	638	0.96
16	16	0.00046	0.047	14.8	1.4	1	23	644	666	644	666	0.97

Sequence Information

Coding Sequence: ATGCTAAACAGCCTAAATGACTCCTCCCGACGTGATGGTCTGTGCATGAATCTGAACAAGACGACAGTCATGTTCAACGACCTCGTCATACCAGCTCCATTAACCGTCAATGGCGAAACTCTCGAAGTTGTCCAGGACTACGTCTACCTCGGGCAGATAGTGCAATCAGATGTTAAAACGCGGAAATACAATGGCTGCGAATCGTCGTCGATGCGCAGGCGGAAAAACCTAGAAATTCTATTCAACAACACCTCGGTGATGCCTTTCAAATGGCGTGGAAAATATCTCTGCTTCTATTGTAGTAAAGATCTTTCCGAATACGACGACTTAAGGAAGCATACGAAATCGCACGGCTGCTGTTCCATAGTAGACCACTCCCTGAAAGTCCTGAAGGGCGGTCAGAACATGGAAATCAAAATTGACGTATCGGACATAAGATGTCAAACATGCGACGAACCTTTCCTAACGCTAGATGAAGTATTGAATCACCTTAACGTGAAACATAAGTTAGAATACGACAAGGAAGTGGAAATGGCTATTGAGGAATACAGATTGGCAGATTTGAAATGCCAGTCGTGCGATGAAAAGTTTTCGTATTTCGGTTATTTAGTATCCCACGTCAACAATAACCATCCGAAGAATTGCCTCCTCTGCGACAATTGCAACCAGAAATTCAACAAAAAGAGAGATTTGTTCTCGCACATGAAAAACTATCACAGAGAGGGCGGGTACAGATGCGAGCTTTGTCCGCAAAGTTTCACGTCATTGAACATCCTACGGAAGCATAGGAACAACCGACATTTCACTAGATGTAACATTTGCCATTTAAAACTACCCTCGGCCGCGTTGAAACAGAAACACATCGACCTGGAGCATCCGGACGATGGCTCTCTACAGTGCGATAACTGCTGCAAGGAATTCCATACGAAGCAGGGTTTAAAAATGCATTCAAGGAAGTGTAAAGGAGTGGAGGAGATGTTCGAAATCGCGATAAAGAGGGAGGGCTATGAGGCTATGGATTTGGACGAAGACTATGAAGACCTAGTGAAGAGACCAAGCGTTAAGCAGATCCGGGAGAACATCGTCACAGTCATCAATATGTCCACAGCTGTaccatttaatttttacaagaaCAAATTCAACTGCTTCTATTGTTCGAAAGATTTCCCAGATTCCGATTCAATGAGGGATCACACGGTCGCGGAGCATCCAGTGTGCGATGTTAAACAGAAATGTATTAGGAAATGTAGGGAATCGGTCGCGTGCGTTAAAATCGACATTTCGACGCTAGCTTGTAAGGTTTGCTTTCAGTCAATTAGTGGATTAGATAATCTTATAGACCATTTGATAGATGAACACAATGCCAATTATGATAAGTCGATTACAACGTGCTTACAGCcctacaaattaattaaagacCATATGGTCTGCCCTGTCTGTCCGAACGAGGAGTTCAGGTTCTTCGGTACGTTACTCAAACATATGAACAAAAAGCataccaataataatattatttgcgtGTATTGCGGGCAGTCTTTCAGACGCGATCAGAATCTAAGGGTACATATATGGCGTCACCATAGAGACGGCAGGTTCAAATGCAACATCTGCGGCGCCGAATGCAATATACCTTCCCGTTTGTATATGCATATGGCGAAGGCGCACGGCGTGAAAGCGGCCAAGTGTCCAAAGTGTCCCGAATCGTTCGCCACTCAGTACCTGAGACAGAAACACTTGATCGATGCTCATGAATCGGGGCACAAGTGTTCTTATTGCGGCAAACTCTTCACTCGTAACTCTTTCATGAGGGATCACGTAAGACGGACCCATTTGAAGGAGAAGAACGTGGAATGCACGATTTGTAACATGAAATTCTTTAACAACATCCTCTTGAGGAGGCATATGGTGAAGCACAGCGGCGAGAAAAATTTCAACTGTGACATTTGCGGAGAACGCTTTTATTGGAGGAAGAGTCTGCGTACTCACATGACGCGCCACAACAAACACGTCACACCAATGCAGATGTAA
Protein Sequence: MLNSLNDSSRRDGLCMNLNKTTVMFNDLVIPAPLTVNGETLEVVQDYVYLGQIVQSDVKTRKYNGCESSSMRRRKNLEILFNNTSVMPFKWRGKYLCFYCSKDLSEYDDLRKHTKSHGCCSIVDHSLKVLKGGQNMEIKIDVSDIRCQTCDEPFLTLDEVLNHLNVKHKLEYDKEVEMAIEEYRLADLKCQSCDEKFSYFGYLVSHVNNNHPKNCLLCDNCNQKFNKKRDLFSHMKNYHREGGYRCELCPQSFTSLNILRKHRNNRHFTRCNICHLKLPSAALKQKHIDLEHPDDGSLQCDNCCKEFHTKQGLKMHSRKCKGVEEMFEIAIKREGYEAMDLDEDYEDLVKRPSVKQIRENIVTVINMSTAVPFNFYKNKFNCFYCSKDFPDSDSMRDHTVAEHPVCDVKQKCIRKCRESVACVKIDISTLACKVCFQSISGLDNLIDHLIDEHNANYDKSITTCLQPYKLIKDHMVCPVCPNEEFRFFGTLLKHMNKKHTNNNIICVYCGQSFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCPESFATQYLRQKHLIDAHESGHKCSYCGKLFTRNSFMRDHVRRTHLKEKNVECTICNMKFFNNILLRRHMVKHSGEKNFNCDICGERFYWRKSLRTHMTRHNKHVTPMQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01337920;
90% Identity: iTF_01155709;
80% Identity: -