Pgla000504.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parnassius glacialis
Gene Symbol
Hr39
Assembly
GCA_033319125.1
Location
JAVANC010000001.1:11133081-11161062[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.28 6.4e+03 -1.9 1.5 76 140 97 175 41 229 0.44
2 4 3 6.8e+04 -8.8 12.1 98 160 266 330 137 360 0.56
3 4 8e-08 0.0018 19.7 0.1 1 20 441 460 441 477 0.91
4 4 3.2e-61 7.3e-57 195.5 0.0 164 379 503 722 471 723 0.83

Sequence Information

Coding Sequence
ATGTCGAGCGAGGGTGATGCGGTAAAGGTGGAGGGGGGTCATGTGTCCGTTACCACTATCAGCATGTCGGGCCCAGAGACCAGCAATGGTCAATTCTCGTATAGCTCAAGCGGAGTACGTATCAGCGTGTCTTCGGTACCTCACGATGAAGACTCCACTGATGCCGAAATCTCCAAGATCGATTTCACGCAGCATCAATACGAGGTCAACATGCGGAATAAAAAGAAGCGTTCATCTAGTGGCGTTCAATGTGACAGCCAAAGTAACGAACGCGAGCGTCCCATGTCATGGGAGGGCGAGCTGTCCGACTCCGAAATGGTCATCGACACCAGTGTCAACAACGATGAAAACAGCAGTTCCATTGACATGCAGTCATCTCGCGACTCCATCGACACTCTCCGCAACGTCACCATCAAAACTGAACCTCTTAAGCCGGAAGCCTTTCAGAGCTTAGACGATCAAAGGGTATTGGATCTAAAATACTCCACGTCGCTACAGTCGCATCAACGGAGCCTCAGTATGAATAGGATATCAGTTCTGACAGACAACACGTCCCTTTCACTCTCTCGGCGGCCTTCGTCTCCTACGAACAGCGCCAAGTCTCTGGTTCTGAACGACCAGACCACATTGCCGCTGATGACGCCCAACGTGGTTGGAGAGGCACAGAACTTGACTATAAAGAAAGAAACTCAATTATCAGAGTTAAAATGCGAAGCGGGCATGGGTATGGAAAAGTTACTGGGGCTGCATGGATCGCCTCTGCTCGGGCGACTTCCCCGCGTGCAGTCCAGCGCCAGCACCGACTCTGCTGTGCACTCTATGTACACGCATAGTGTGTACAGCAGTCCGTCTGCGAGTCCGCGGCCGGCGCGTCACTACACGCCGTCCTTGTCGCGCAACAACAGCGACGCCTCGCACTCTTCCTGTTACTCCTACAGCTCCGAGTTCTCGCCCACGCACTCGCCCGTACAGAGTCGGCAGCCACACGTGGTGTACCGCGAGGCGTCGGCAGTGTTCCCCGCGTCGCCGGCGCACGACGAGGACGCTGACGCGGCCGACGAGCGGCTGCACCACCACCAGGGCATCAGCAGACAGCAGCTAATCAACAGTCCGTGCCCAATATGCGGGGACAAGATCAGCGGTTTCCACTACGGGATATTCTCGTGTGAGTCGTGCAAGGGCTTCTTTAAGCGAACCGTGCAAAACAGAAAGAATTACATGTGCCTTCGCGGCGGCAATTGTCCCGTCACTGTAGCTACGCGCAAGAAGTGTCCTGCATGCCGTTTCGACAAATGCCTCGGGTGCGGGATGAAGCTTGAAGCGATACGCGAGGATCGGACTCGAGGCGGTCGCTCTACGTACCAGTGCTCGTACTCCCTGTCGGGCGCCGCGTCCACGGGCTCGCTGCTGTCCGCGCACGTGCCCACTACACTACGGCACGCGTCCAGCCTCACCTGCGTGAACGGTCCAGGGTCATACAGCAGTAGAGGAGAACCCAGCAACAGTCGACTGACACCTGACATTCCACCATTATTGCAGGAGATAATGGACGTGGAGCACCTGTGGCAGTACAATGAGTCGGAGCTGAGCCGTTTGGGCAAGTCGTCCGGCGGCGCCAACCCTCTACTAGCGGCGAGCGGCATCAACCCGCACACCTCCAGTGCGGACCTGCTCGCTGACTTGTGCCACATCGCGGACCATCGTCTCTATAAGATCGTCAAGTGGTGTAAGAGCCTGCCGCTCTTCAAGAACATATCCATCGACGACCAGATCTGCCTGCTGATCAACAGTTGGTGCGAACTGTTGGTGCTGTCGTGCTGCTACCGCGGAGTCAGCACGCCCGGCGAAGTGCGCGTGGGAGGCGGCCGCGGCATTACACTGCATCAAAGTGCTAAGTTCGGTTTGACGCCGTGTATAGAACGCATGCTGAGCTTCACCGACCACTTGCGGAGGTTGCGGGTCGACCGATATGAATACGTCGCGCTTAAAGTTATCGTACTGCTCACTTCAgACGCACCCGAACTGCGTGAAGCGGAGAAAGTACGAGCGTCCCAAGAGAAAGCGTTGGCGGCTTTGCAAGCGTACACAGCTGCACACTCGCCAGACACTCCCGCGAAGTTCGGCGAGCTGCTGTTGCGTATACCCGAGCTGCAACGAACATGCCAGGTataa
Protein Sequence
MSSEGDAVKVEGGHVSVTTISMSGPETSNGQFSYSSSGVRISVSSVPHDEDSTDAEISKIDFTQHQYEVNMRNKKKRSSSGVQCDSQSNERERPMSWEGELSDSEMVIDTSVNNDENSSSIDMQSSRDSIDTLRNVTIKTEPLKPEAFQSLDDQRVLDLKYSTSLQSHQRSLSMNRISVLTDNTSLSLSRRPSSPTNSAKSLVLNDQTTLPLMTPNVVGEAQNLTIKKETQLSELKCEAGMGMEKLLGLHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRPARHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQSRQPHVVYREASAVFPASPAHDEDADAADERLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYSLSGAASTGSLLSAHVPTTLRHASSLTCVNGPGSYSSRGEPSNSRLTPDIPPLLQEIMDVEHLWQYNESELSRLGKSSGGANPLLAASGINPHTSSADLLADLCHIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLHQSAKFGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALAALQAYTAAHSPDTPAKFGELLLRIPELQRTCQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00958006;
90% Identity
iTF_00922930;
80% Identity
iTF_01155467;