Pgla033969.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parnassius glacialis
Gene Symbol
LRRFIP2
Assembly
GCA_033319125.1
Location
JAVANC010000016.1:6766845-6780575[-]

Transcription Factor Domain

TF Family
LRRFIP
Domain
LRRFIP domain
PFAM
PF09738
TF Group
Unclassified Structure
Description
LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.7e-23 8.4e-19 69.8 3.3 135 268 856 989 845 1008 0.88
2 2 3 6.8e+04 -8.0 17.1 1 48 1009 1055 1009 1083 0.70

Sequence Information

Coding Sequence
ATGTACTGTAAACTTCGTGAGCAGCGAAGAGGTGGTGGCATTGTGATGTATATAAAAAATACCCACAAGTTCCAAATTCTAAATAATATATCACTAAACCATTGTGAATCTTTAATAGGAAAATTATCTACGTCACTTCATTACACGGCACTTATTTGTTCATTGTATAGACCACCTAAAGAAAGCAAACACTTATTTATCAAGGAATTGAGAGAACTCTTGTGTAAGGACTCTTTTAAACGCTTAGATTTATACTTATTGGGTGATATAAATATCGACTTGAAGTCGCATAATAACATACGTGAATACTATATATGTTGTATGGCCGAGTGTGGCCTAGCGAGTGCAATATCAGATCATACTAGAATCGAAAAACGAAATGATACTATTACGCGGAGTTGCATTGATCATATTTTTGCAAGAACGCGCTCGCTAGACCTTTACTCGGCCGCGCTCGGTACTGTTATGGCGGACCACCGTATGATTGTGTTGTTGTGCATAGGAAGCGGAGTTAAAAACATTATACAGAATGGTGCAAAAAATAAACAGCtaattgattataatatattaaaaccaaAGCTCAATGAAATAGATTGGAATGTAGCCGATAAGATGCGATGTCcgatagaaatttataattatataaaaaataaattcgaaaTATGTTACGAACAatctaaatatacaaaaaaaatacatttgaataGCAATAGAAACAAAGAATTatggataaataataaaattaacaatatgtgcCAAAAAAGAGATTTACTTTTTAATCAGTGGAAAAAAGATACCAATAATCATATACTTAGATTAGAATTTAATAAACAGCGAAATAAAACTCAAAAGTTAATAGAAAAGTCTAGAAACAAATACTTTAATGATACaattaacaataatataactaataaaaagaaaatgtggGATATATTAAATACACTGACTGGTCGCGTCTGTAAGTCAGTAGATGAAGCTGTAATCAAAGCATTTAAGAATAacaatttatcattaaaaaatatagCTAACAATTTTGGTAAGGAATTCTGCGAAAACGTTACGAACATTTTACCTAGCTGCAGCAAAAAACTCATGTCAGAATCGGAATATATATTTCCAGAAAATAAATCTATGTTATTTAGAAAACCTACTAAGCGCgatatattaactattataaaaagtctaaatgcaaataaatcggcTGGTAATGATGGAATTCGATGTTTTGACGTGAAGATGTTAAGTGATAAGATAGCTAATGTTGTAGTTAAGTTGATAAACACTAGCATATCAGTAGGAAAATATCCACCCGAATTGAAAACCGGTATCGTAAGACCAATTTACAAAAAGGGATCCCATATTGACTATGATAGCTATAGGCCAATAACAATACTGCCAGTCATTGATAAGGTAGTTGAAAAATATGTATCTCAACAAATTCACAATTTTTATACTAAACACGATGTATTGTCAAATACTCAACATGGCTTTCAATCTAATAAATCAACTACTATTTTGCTGTCTAAATTCACGGACGAAATAAATCAACACCTTAATGATAAAAAACATGTTATATTACTATTCATCGACTTTAGTAAAGCATTTGATACTCTTAGGCAtgatattcttataaaaaaacttGACAATACAGGTGTCCGCGGGCCATTATTACAATGGTGCCAAGATTATCTCAACGGTAGAAAATACCGGGTTAAGATTGGCAATGACTTCAGTGACGAAGTACTGGTAACTACTGGAACAGCTCAAGGCTCTGTTCTCGGACCCTTGCATTATTTAGCGTACGTCAATGATATGGAAAACACAATAAAACACTGTTCCATATACCAATACGCTGACGATACATGTCTTGTAGCAGCTGATAAAGATTTAGCTAAGGCTGAACACTGCTTACAAATTGATTTCACTAACTTATGTAAATGGTCTCATGATGTTGGTCTAGTACTCAATGCTAGTAAAACTAAAATCATTCATGTTCGCTCTAACTACCTACTCAATTTTGATAAGAAAATCGAAGTAATCGCGCATAGTCACCAGTGCTTGCATGTTTTGCAAACAAATAGGACCGGTTGCAAATGTGAGTTGTTAGAGCAGGTTCCTCGTTACAAATACTTAGGACTAGTAGTCGATGACAGGCTTAATTGGGGTTATCATATTGACACAATTTGTGACAAACTGAGAGCAATGTTAGCTAAATTTGCTATCTTGAAATACAAAGTAccatttaaaatattactaaatctATATAATGCACTAGCAGAGTCAATAATTTCATATGGGATCACTAGCTATGGTAGGACATTTAAAACTTATTTGGACAAAATATACAACCTTCAACTTcggtttttaaaaattataactcctaataaaattaaaaaatcaatctgCTCCGATGACGATGTATTGcccttatttaaatattgtaaaatcttacctgttcatataaaaataaaaatgtggctATTAATTGAACAATTTACTAACAAAGAACTACAAATAAAAGTCAATCATAATATAACGACACGGAAAGTTGTGCAATCAAAACTAGTAATACCAAGACGGGAACACAAAGAGAAGTGCTCGGCGCACGAGCGGCTAAAGCGCGAGCACTTGGCGCTGGAGCGCGAGGTGACGTGCGCGCGGGACGCCGTGCGCGCGCGCGAcgcggcggcggcggccgcgGGCTTCGCCTTCGTGGAGGCGGCCCAGTGTGCGGAGATGCCGCAGGGCTTCGGCAGCGTGCCGCCGCTCGCGCTCGTCTCGCACCACTCCGAGCAGCTGCTCAACGACGCCGGCGAGGGCACGCTGGATGTACGGTTGCAGAAATTGGTGAGTTCGAAGCAAGCATTGGAGTCAGAAGTGCGCAAACTGAAACTTAGTCTCAACGAGGAGCGTGCCGCGCGACAAAATGGAGTCGCATCGCTACATGAGCGCGAACACGACAGCGAACTGGAATCTTTACGCAAATCTGTGGCGGAGGCAAAGGGACGAGCTGCGCGAGCGGAGGCTGAAGCTGCGCTGCAAGCGGCCGCTGTGGCGCGCCTCGAGGCGCAGGTGGCCCGCCTGCGTGCGCGCCAGGACCACCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGACGTCTGCAGCGCGAGGCAAGAGAAGCCCTCAACCGAGTGGAAGAATTGGAGACGGAGAACAGTCATCTGACAAAACGCCTTGACAAACTCAAGAACGCTAAATCTGCGCTCCTGAAAGAACTGTGA
Protein Sequence
MYCKLREQRRGGGIVMYIKNTHKFQILNNISLNHCESLIGKLSTSLHYTALICSLYRPPKESKHLFIKELRELLCKDSFKRLDLYLLGDINIDLKSHNNIREYYICCMAECGLASAISDHTRIEKRNDTITRSCIDHIFARTRSLDLYSAALGTVMADHRMIVLLCIGSGVKNIIQNGAKNKQLIDYNILKPKLNEIDWNVADKMRCPIEIYNYIKNKFEICYEQSKYTKKIHLNSNRNKELWINNKINNMCQKRDLLFNQWKKDTNNHILRLEFNKQRNKTQKLIEKSRNKYFNDTINNNITNKKKMWDILNTLTGRVCKSVDEAVIKAFKNNNLSLKNIANNFGKEFCENVTNILPSCSKKLMSESEYIFPENKSMLFRKPTKRDILTIIKSLNANKSAGNDGIRCFDVKMLSDKIANVVVKLINTSISVGKYPPELKTGIVRPIYKKGSHIDYDSYRPITILPVIDKVVEKYVSQQIHNFYTKHDVLSNTQHGFQSNKSTTILLSKFTDEINQHLNDKKHVILLFIDFSKAFDTLRHDILIKKLDNTGVRGPLLQWCQDYLNGRKYRVKIGNDFSDEVLVTTGTAQGSVLGPLHYLAYVNDMENTIKHCSIYQYADDTCLVAADKDLAKAEHCLQIDFTNLCKWSHDVGLVLNASKTKIIHVRSNYLLNFDKKIEVIAHSHQCLHVLQTNRTGCKCELLEQVPRYKYLGLVVDDRLNWGYHIDTICDKLRAMLAKFAILKYKVPFKILLNLYNALAESIISYGITSYGRTFKTYLDKIYNLQLRFLKIITPNKIKKSICSDDDVLPLFKYCKILPVHIKIKMWLLIEQFTNKELQIKVNHNITTRKVVQSKLVIPRREHKEKCSAHERLKREHLALEREVTCARDAVRARDAAAAAAGFAFVEAAQCAEMPQGFGSVPPLALVSHHSEQLLNDAGEGTLDVRLQKLVSSKQALESEVRKLKLSLNEERAARQNGVASLHEREHDSELESLRKSVAEAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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