Pgla012228.1
Basic Information
- Insect
- Parnassius glacialis
- Gene Symbol
- -
- Assembly
- GCA_033319125.1
- Location
- JAVANC010000005.1:39155633-39157529[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.5e-07 0.00011 23.7 0.0 3 36 17 50 15 56 0.92
Sequence Information
- Coding Sequence
- ATGCCATGCAACTATTCTAGAAAAACAGACCGACAGGATTGGGATAAAACTTCCATGGAAAAGGCTATTGAAGCTGTAAAGAATAATGAAATGGGCTGGCTATTGGCTTCTAAAGTGTTTAACGTCCCACAATCGACTCTTAGAAGACATGCACTGAAACAAAATAAAGTCTTAGCTCCAACTACAAAAGGTATGGGTAGGTACAGGAGTGTCTTCACATATGAAATGGAACGAGAACTGGTAGAACATATTAAATTACTAGAAGCGAGATTGTTTGGATTCACAAGAAAGGAAGTTTTGGAATTGGCGTACCAGTTTACAGGCGTTAATAATATTCCTCATAACTTCAACAATGAAAAAAAGATGGCAGGCAAAGAATGGTTGGCGGAATTTCGACGCAGACACCCGGACATATCCTTGAGGAAACCTGAAGCGAATTCAGCTGCAAGAGCCCAAGCCTTCAACAAGCCCCAAGTAGCACTGTTTTTCAACACTTACCAAGACATTATTCAGAGCAACAACATTTCTCCTCATAGGCTCTACAACGTCGATGAGTCAGCATTATCAACAGTCCAGAGACCCCAAAAGGTCTTTGCTACTACTGGGCGTAAGCAGGTTGGGGCTTTGACTAGTGCTGAAAAGGGAAAAAATATGAAACAGGAGTTGATAGACGAAGCTCCTACTGGTACTATGAGTATTGCGCAGGAATCAGGTTGGATGACAAcagctatattttataaatgGTTGGTGCACTTTGATGACAAAGTGCTTTTAATAGTTGATGGACATATCAGTCATAAAGGTATTGAAAGCTTAACATTCGCAAAAGAGCATGGAATCATTATGGTGTGCTTGCCACCTCACTGCACGCACCGCATGCAACCATTAGATGTATCTTTCTATGGTCCATTGAAGACTTATTTTAATCAAGAAGTGAGCACTTGGTTAAAGAGCCATCCAGGTGGAGTTGTTACTCACTTTCAAATAGGCGCAATACTCAACAAAGCTTATGGCAAAGCAGCAACGGTTCAAACTGCCGTCAATGGATTTCAAAAAACTGGGCTCTGGCCTGTTGATCCATACATATTTCCAGATTATTCGTTTGAGCCTGCTGAGACGACAAACATTCCCATGCAACAAGATCGGGTAGAGCCCGAAGAAGATTCAACGGCAGCAGAAAACCTATGCATACCCTCAGCGGATTCATCTCAGGTAGAAGCAGGGAGTTTGACATCACTAATAATTGCAAGCACATCAGCTGCAGACAACCCACGTCCACTCTCAGTAGTCCAATCTAGAGACACAGCTACTGCAATACCTACGACACCCACATCATCTAAATTTATACTCCAAGAAATATCTCCAGTGCCAAAAGGAATTTATGTGGCTGGACAAGGTAAAAGAAAACCACGCAAGAAACCAACAGAATTGGTCTTAACTTCAACGCCAAATATAGAAGAGGCAAAAGCAAAATCAGCTCCTCCACCTGTTCCAAAGAAAAACACGAGAAAGGTTACAAAACCTCTGGATTTTAGTTCCGACAGTGAAAATGATTTCTCTTCCTTACAAGCTCACACTGAAGCcggagatgatgatgaagattgtCCTTGCATTTATTGCAATGACCTCTACTCCAGGTCAAAGCCAAAAGAGGTCTGGCTAAAGTGCTTGAGCTGTAAAAGATGGGCTCATGCATCATGTGCAGATGTTCCGAAAAATACAAAACGTTTTACGTGTGAACTCTGCATGTAA
- Protein Sequence
- MPCNYSRKTDRQDWDKTSMEKAIEAVKNNEMGWLLASKVFNVPQSTLRRHALKQNKVLAPTTKGMGRYRSVFTYEMERELVEHIKLLEARLFGFTRKEVLELAYQFTGVNNIPHNFNNEKKMAGKEWLAEFRRRHPDISLRKPEANSAARAQAFNKPQVALFFNTYQDIIQSNNISPHRLYNVDESALSTVQRPQKVFATTGRKQVGALTSAEKGKNMKQELIDEAPTGTMSIAQESGWMTTAIFYKWLVHFDDKVLLIVDGHISHKGIESLTFAKEHGIIMVCLPPHCTHRMQPLDVSFYGPLKTYFNQEVSTWLKSHPGGVVTHFQIGAILNKAYGKAATVQTAVNGFQKTGLWPVDPYIFPDYSFEPAETTNIPMQQDRVEPEEDSTAAENLCIPSADSSQVEAGSLTSLIIASTSAADNPRPLSVVQSRDTATAIPTTPTSSKFILQEISPVPKGIYVAGQGKRKPRKKPTELVLTSTPNIEEAKAKSAPPPVPKKNTRKVTKPLDFSSDSENDFSSLQAHTEAGDDDEDCPCIYCNDLYSRSKPKEVWLKCLSCKRWAHASCADVPKNTKRFTCELCM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01156379; iTF_01430750; iTF_00445093; iTF_00290631; iTF_00290633; iTF_00290634; iTF_00290635; iTF_00290636; iTF_01031084; iTF_01031085; iTF_01031086; iTF_00072113; iTF_01361556; iTF_01361557; iTF_00122327; iTF_01064600; iTF_01064601; iTF_01064602; iTF_01430751; iTF_01155110; iTF_01158894; iTF_00290632; iTF_01158896; iTF_01158897; iTF_01264539; iTF_01026108;
- 90% Identity
- -
- 80% Identity
- -