Basic Information

Insect: Parnassius glacialis
Gene Symbol: -
Assembly: GCA_033319125.1
Location: JAVANC010000017.1:14614442-14617126[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.9e-10 5.8e-08 34.2 0.0 4 38 17 51 14 58 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.9e-10	5.8e-08	34.2	0.0	4	38	17	51	14	58	0.86

Sequence Information

Coding Sequence: atggaatctactAAAAAGAAATACGCAAGATTCCGTTATACTCAACAACAGTTAGAGGAGGCTCTTACCCGTATAACAAATAACGATTTGTCTATTAATAAAGCCAGCAAAATATACGACATACCCAAATCAAcgttaagtaataaattaaataataaagtaccaTGGCAACGAAAAATGGGTCCATTAACACAACTAACTTTCGACGAAGAAAACAAGCTAGCAGACTGGATTTTAACAAAAGCTAAACTTGGGTTTCCAATGCACCCGGAAGAAGTTTATGATACTGTGGAAATATTCTTGAAACAAAATGAGAGggagaataaatttacaaaaggCCGACCGGGGAAAAAATGGCTTACTTTGTTTTTGCGAAGACATCCCGAAGTAACTAAAAGAAACGCTGAAATAATATCAAAAGCTAGGGCAGCGGTTACAGAAGAGGCCATCAGAAATTGGTTTACTGAATTGAACAAGTTTTTAGAGGAAGAAAATGCCTTAGACATTAAAGATGACCCGACTCGTATTTTCAATTCAGATGAAACTGGCGTCATGACTTGTCTTAAAACGGGGCTGATTTTGGGgcccaaaaattataaaaatacatacgaAATCGCAAGTGGGAAAGAAAAAGAATCAATCACAGTCCTATGTACATTCTCTGCTGATGGTACTGATGTACCACcgtttgttttgtatccatataAAAGAATGCCACCAGCCGTAATTCAAAATTTCCCAGATACTTGGTATATTGGCCGTTCCGACAGCGGGTGGATGGTATCAGTTGTATTTTTTACCTACATTAAGTTATTTTATGAATGGTTGGTAAAAAATGAAATCCGGTTGCCTGTATTGCTATTTCTGGATGGCCACAAGTCCCATATCAATCGTGACATGTTTGATTTCTGTCGTGAAAAAGGAATAATGATTTTCTGTTTATATCCCAACTCAACTCATATTTTGCAGCCCTGTGATGTAGGAATATTTGGACCGTTGAAGAAAAATTGGAAAAGGGTAGTGAGAAAGCATAAACAGGCATCCACTGTacctataacaaaacaaaattttgctGCGTTGTTTAAAATAGCTTACGACAGAAGCATTAAGCCAACTACGATAAAAAATTCATTTAGAGTTTGTGGTTTATATCCAATGTCTCCAGATGCAGTTGACTACTCACGCTGCATAAGTAATAGAAGGCAAGAAATTGCGCAACAAAACCAAAAAGGCACCACAACCTCTAGTCTTCATGACCAAAAAGAGGATCTACGAAGTACGATCAAGGTTATAGAAGGTGAAGTTGGCCAGATGATAAGAAATGAGTTTGTCATGTCTTACAATTTAAACCGTTCTCATCCCCATCAATATTTTGAGCTGTGGAAAAAATGTAGAAATCAACTTGAGAATAAAAAACAGAGTGACACGATAACACCGAATACCCCGATCATTCCTCTTGATCTGTCAGTATCATCTATAGAAGCGTCTACTTCAAACGAGGACGATTCCAAACTGGAATCAAGCCAGGCACTGGAAAGGAATAGTGTTCCCGAAATCGTCGAGTCTGAAATTACAAATGTGGAAACTGAAGAAATGCATGCAACTAATAGTTCAATTATAATAGATTCGGCAATCCGACTGCCATCGGATAATTCCATATTATTGGGTGAGACTAGTATTTTACCCAATTTACCACCCTTTGATACAACTGAAGATGTCATAGATTTTATTATTCAGAATGAAATAGACATACCTGATGTGATACCATTGCCATGGTATGATACTTTAGAAATAATAGTAGAAAAAGACCCCATTATTGACGCTCCTAATAAATGCTCTTCTCCTCAGAATAACGCATCATCCATACCAGCCATTCCCAGTTGCAGCAATAACACTAATCAAGCAAAAAATTCGCTTGAGTCCACAGTTGATAGTCAGACTGCAATAAAGTCTGTAATAGATCCCACTAATAGTATTAATTCATCGAATGATACAAATCCATCCAATCCACTAGaaggatttttgaaaataccGGATTTACCACAAAAGaaatttaaagttacaaaaaaaatGCCTGCACCTTATGGATTAACAGGGCTCAAAtacaaagaatatttaaaaaatcaggACGATGAGAAAAAAATTAAGGAGGAAGAATTAGCGAATAAAAGAAAGGAACGAGAAGAAAAAAGACTGAACAAACAAAAATCTCAAAGCAAAAAACGTGTTCAACTGAAACGCCCAAAAAATCCCCTTAAAAAGCAAGCTAAGAAAATGAAAGTAGAACATGATGATCACACACAACCTGCCGAAGATTTTATAACAACAGATAATTTAGAAGCAAGTGAAGAGACTGAAATAGAAACTAGGAGAACTACTACGACTTGTACTGAATTTAAGGACAATTTATTTGATAGATATGTACTGGTTCAATTTGAGAGTGGAAAGAGAATGCGTCATTTTGTAGGAAAAGTGATAATGGTAAATGAcaatgaaagaaaatataaagtAGATTTTCTTAGAAAAAAATCCGTTGTGGAAAATGTTGTCAATTTTGCAAAACCAATAGTGCCAGATATTGCAGAAGTTGATTTCGATGATATTAAACGTGTATTCGGTACACCGAATATTTCTAGGCGCGGATTAATTTGTTTTGACGATTTAGTATTTAAAGatattgaataa
Protein Sequence: MESTKKKYARFRYTQQQLEEALTRITNNDLSINKASKIYDIPKSTLSNKLNNKVPWQRKMGPLTQLTFDEENKLADWILTKAKLGFPMHPEEVYDTVEIFLKQNERENKFTKGRPGKKWLTLFLRRHPEVTKRNAEIISKARAAVTEEAIRNWFTELNKFLEEENALDIKDDPTRIFNSDETGVMTCLKTGLILGPKNYKNTYEIASGKEKESITVLCTFSADGTDVPPFVLYPYKRMPPAVIQNFPDTWYIGRSDSGWMVSVVFFTYIKLFYEWLVKNEIRLPVLLFLDGHKSHINRDMFDFCREKGIMIFCLYPNSTHILQPCDVGIFGPLKKNWKRVVRKHKQASTVPITKQNFAALFKIAYDRSIKPTTIKNSFRVCGLYPMSPDAVDYSRCISNRRQEIAQQNQKGTTTSSLHDQKEDLRSTIKVIEGEVGQMIRNEFVMSYNLNRSHPHQYFELWKKCRNQLENKKQSDTITPNTPIIPLDLSVSSIEASTSNEDDSKLESSQALERNSVPEIVESEITNVETEEMHATNSSIIIDSAIRLPSDNSILLGETSILPNLPPFDTTEDVIDFIIQNEIDIPDVIPLPWYDTLEIIVEKDPIIDAPNKCSSPQNNASSIPAIPSCSNNTNQAKNSLESTVDSQTAIKSVIDPTNSINSSNDTNPSNPLEGFLKIPDLPQKKFKVTKKMPAPYGLTGLKYKEYLKNQDDEKKIKEEELANKRKEREEKRLNKQKSQSKKRVQLKRPKNPLKKQAKKMKVEHDDHTQPAEDFITTDNLEASEETEIETRRTTTTCTEFKDNLFDRYVLVQFESGKRMRHFVGKVIMVNDNERKYKVDFLRKKSVVENVVNFAKPIVPDIAEVDFDDIKRVFGTPNISRRGLICFDDLVFKDIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01154981;
90% Identity: iTF_01158683;
80% Identity: -