Pgla037384.1
Basic Information
- Insect
- Parnassius glacialis
- Gene Symbol
- TFDP1
- Assembly
- GCA_033319125.1
- Location
- JAVANC010000017.1:30721269-30738781[-]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-23 3.3e-19 70.2 0.1 2 65 137 216 136 216 0.97
Sequence Information
- Coding Sequence
- ATGTGTTATGACTTGTTGAAATGCGTTATAGGTTATGGCGTGTTCACTACTCGCAGCGTTCAAAGGCGTAATAGCAGTTCACACTACTTTACTTATACACAATACACATACAGTGGATACGGCGaattggTGCAAGTGCCTGTTGAAGCATTAACTCAATTACAGAAAGTAGAACAAGAAGTTAAGTCACAGGAAACTGTTCAGGAACAAATATCAGATTACCATATTGTACAGTCGGTGCCAAAGCTTGTACCTATTCTGCCAAAACCTGAAACTCCTTTTAAAAAACTCAGAAAATCTAGTGATTTATCTCCGACAATGTCACATGCATCAAGACGGAGACATGATTCTGATAATGATCCACCAGCAGAAtaCACAACAAAAAGACGTAAGCACGCCGATAAAGTGGGCAAAGGATTGCGACACTTCTCCATGAAAGTTTGTGAGAAAGTCAGAAATAAGGGTTTCACGTCATACAACGAAGTTGCTGACGAGTTAGTACTAGAGTTTGCTGCTGGAATGCATGGTTCTGCAGATAGCCAACAATATGACCAGAAAAATATTCGCCGAAGAGTATATGACGCTCTAAACGTCTTAATGGCAATGAATATAATAtcgaaagaaaagaaagaaattaGATGGCTAGGCCTTCCAACAAACTCAATACAGGAGTGCACAGCACTAGAGAAAGAAAAGCAAACAAAATTAGAACAAATACAGAAGAAAACTCAACAATTACAAGAGCTTATTTTACAGCATATATCATTCAAAAGTTTAatagaaagaaataaagaaacagAAAAAAAAGGTGTGAAACCATCACCGTCGTCAGCCATTCATTTACCATTCATAGTTGTAAATACAAGCGACAAAGCATTGATAGACTGTAGTATATCTAATGACAAgACAGAATATATGTTTAACTTTAACAAGAGGTTCCAGATACATGATGATATAGATATATTAAAAAGGATGGGTCTTCTGTTTGggTTGGACAAGGGGGAGTGTACAGAAGACGatctaaataaagttaaaaatatggTACCAAAATCATTAGAAGTATATGTGGAACaAATGGGAAGAGGTGATAGCACTCTTAGTAACTTATTAGAAGATGAAGAAATTGAAGAAGCTGAAAATGAAGATGAAACTTTAGACGAAACAGACGTAAAGGACGAGCAAGAAGAAGATGAGCGTAACGAATACAGCGAAGACAGTAGCGATGTGGACGTCTAG
- Protein Sequence
- MCYDLLKCVIGYGVFTTRSVQRRNSSSHYFTYTQYTYSGYGELVQVPVEALTQLQKVEQEVKSQETVQEQISDYHIVQSVPKLVPILPKPETPFKKLRKSSDLSPTMSHASRRRHDSDNDPPAEYTTKRRKHADKVGKGLRHFSMKVCEKVRNKGFTSYNEVADELVLEFAAGMHGSADSQQYDQKNIRRRVYDALNVLMAMNIISKEKKEIRWLGLPTNSIQECTALEKEKQTKLEQIQKKTQQLQELILQHISFKSLIERNKETEKKGVKPSPSSAIHLPFIVVNTSDKALIDCSISNDKTEYMFNFNKRFQIHDDIDILKRMGLLFGLDKGECTEDDLNKVKNMVPKSLEVYVEQMGRGDSTLSNLLEDEEIEEAENEDETLDETDVKDEQEEDERNEYSEDSSDVDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00204168; iTF_01176006; iTF_01337568; iTF_01494114; iTF_01494856; iTF_01495578; iTF_00922694; iTF_01142918; iTF_00249511; iTF_00180243; iTF_01115508; iTF_01141447; iTF_01402538; iTF_01129850; iTF_01156080;
- 90% Identity
- -
- 80% Identity
- -