Papo018631.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- -
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010001179.1:241309-308843[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.4e-12 7.8e-09 35.7 0.1 7 49 220 264 216 267 0.87 2 17 3.7e-06 0.021 15.1 0.2 22 50 265 292 261 298 0.83 3 17 2.3e-05 0.13 12.5 0.1 29 49 298 318 291 320 0.81 4 17 1e-07 0.00056 20.1 0.1 22 49 319 345 316 347 0.84 5 17 7.9e-08 0.00045 20.4 0.1 22 49 346 372 342 375 0.84 6 17 8.4e-06 0.048 13.9 0.1 22 49 373 399 371 401 0.84 7 17 6.5e-06 0.037 14.3 0.1 22 49 400 426 397 429 0.84 8 17 8e-08 0.00045 20.4 0.1 22 49 427 453 423 456 0.84 9 17 9.8e-08 0.00056 20.1 0.1 22 49 454 480 451 482 0.84 10 17 1.8e-07 0.001 19.3 0.1 22 49 481 507 479 510 0.83 11 17 7.7e-08 0.00044 20.5 0.1 22 49 508 534 504 538 0.84 12 17 1.4e-05 0.081 13.2 0.1 25 49 537 561 531 563 0.82 13 17 9.8e-08 0.00056 20.1 0.1 22 49 562 588 559 590 0.84 14 17 9.8e-08 0.00056 20.1 0.1 22 49 589 615 586 617 0.84 15 17 1.6e-07 0.00088 19.5 0.1 22 49 616 642 613 644 0.82 16 17 5.7e-06 0.032 14.5 0.1 22 49 643 669 639 671 0.83 17 17 1.1e-08 6.2e-05 23.2 0.0 22 70 670 713 666 718 0.86
Sequence Information
- Coding Sequence
- ATGTCAGACGAAATGGCGGTGGGTGATAATTCGACAAGCGATGAGAGTAAAGTAAACAGCAATGATACTGCGGAGGAGAATGTTAAAGGTGCTGGTGAAATCAGTCCGAAGCCATCGAGTGAACCGCCTGAAACAGAGGAAGCACAGGTTCCTGTGGATGATGCACCAGAAACGGAAACAATAGGTGAACAAAAGTCAGATACTGAAAAAAAAGAAGCTGAAGACATACCCTCACAAGAAATCACAGAAGAAAATTCTGATGAAGAGAAGAGGGGTATCAAACGTCGAGCATCTATTGCGTTTAGCGATACTGGAGATGAGGAGTTTAAGggatttgataaaataaatgacgaGAATTTTTGTGGAGTATACTACCGTGTATTAGAACGCTTGGAGGAGGAAGTACAAACAGCTGTTAAAGATCTTAAGCCTGTCAGGAGTTTTCGGGCTTCTCTAACAGCTTCAGTGCAGGCAAGCAAAAGGCCACGACAGGACACAGATGGATCCAGACCATCATCAGCTTTATCATCACGGTCAGATGGTGATAGCACAGagTGCTCCCATTCTTCAACTGTCACTGCTGGAAATGTTGCACGGATGGGCGCGGCGCCGGGAATTCGCGGGCGGCGCTCGACGACGGAGATGTCGTCGCCGCTGCTGCGAGCGCCGCTGGAGCGCGGCTGGCGGCGCGAGCTCGTGTACCGCGCCGCGCTCGACGCGCACTCGCGCCGCAACGCCGACATCTACTACTATACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGAGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGTCGTACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGAGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCTGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCTGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGAGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCTGACATCTACTACTACACGCCGCAGAGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCTGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGACGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCTGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGTACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGAGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCTGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGACGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGGGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGAGCAAGAAGCTGCGCTCCACCAGGGAGGTACGTAGTGCCGCACCGCGCCGCAACGCCGACATCTACTACTACACGCCGCAGAGCAAGAAGCTGCGCTCCACCAGGGAGgtTGCCGAGAATTTAGCAGGAACTGGTCTAACTTTAGAAAACTTTTCCTTCTTCAAAGAACCACTTGGTGTGGATGATCCTGAGAAGGAAATTATACGAGATGCTAAATTAATGCGTCGCGTGGAGTCTCCAGTCCCAGTTCCTGCGGCGCCCACGATAGAAGGCAAGCGGACGCCGAAGCCCAAACCTCCCAAAGGTGCCAGCCCGGAGCCAGCTACACCAAAGTCACCACCTGCTAAAATCAAGGTGAAGTCTGTAGGCTCACGTTTAAGTAACAATGGGACCCCTCCAGCTGCCAGTGTGCCCAAACAGCCGCGGCGCCCGCAGTCCACAGCTGCGACAGCTGCCAGCCCCGCCCCCGCTTCCTCTCCTGCCCCCGCTACCGCTAACGCTGTGGACAACAACAACACTGCTGCCTGGAAGAAACCTAGGGCGGCGGCGCTGGCGCTCCCGCAGCCGCCACCGCTGCCGCCGCCGCAACAGCTCCCGCTCCCGCTCCCGCCGCCGCTCACgctgccgccgccgccgccgccgccgcttcAGAGCCGCCCGCTCCAGGTGCCCGCCGATACTGCTGTACAGAACCCGCAGCAGGTGGTGCAGCCGTGCTCGATGTCGTGTGGGCGCGGAGCCGTGCCGTCGCTGGCGTGCGTTGCTTGCCTGTGCCTGTACCACCCCGCCTGCGCCGGCCTGCCGCCCGCACTGCTGCAGCACCAACACTTCCTGTGCAAGAACTGCCGCAAAACATCATCACCACCATTAGAACCACCTCCCCTGACGCACAAGTCTGGGGCCACAGCCAGTGCAGCGAGCGGAGCGGGGGCGGGAAGCGGGGCGGTTGCAGCGAGGCGACCCGCCCCGGTGTCCGTCCCACCAACCGTCTCAGCTAAAGTGCGACCTGACAAACGAGTCATGTTGCGGATGAAGGTGGCAGGCGGTGGCGCGGACGGGTCTCGTGTTTGGGCAGTAGCAGCGCCCACAGCTGGCAGTGGAGCGGGCGGGGCCACGAGCGGAGCGTTAGGGGCCACGAGCGGAGCGGTAGGGGCCACTAGCGGAGCGACAGGGGCCACAAGCGGAGGGGGCGGCGGGGCCACAAGCGGAGCGGGCTGTGGACCTCCATCAGGCGTCAGGCCAACGTTACCACAATCTCTCGCAGTACTCAACGGCAGGCGCTTCATCGTCGTACCTCGCTCGCTTGTGAACTCCGATCAACATTAA
- Protein Sequence
- MSDEMAVGDNSTSDESKVNSNDTAEENVKGAGEISPKPSSEPPETEEAQVPVDDAPETETIGEQKSDTEKKEAEDIPSQEITEENSDEEKRGIKRRASIAFSDTGDEEFKGFDKINDENFCGVYYRVLERLEEEVQTAVKDLKPVRSFRASLTASVQASKRPRQDTDGSRPSSALSSRSDGDSTECSHSSTVTAGNVARMGAAPGIRGRRSTTEMSSPLLRAPLERGWRRELVYRAALDAHSRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQSKKLRSTREVRSVVPRRNADIYYYTPQSKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQSKKLRSTREVRSAAPRRNADIYYYTPQSKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSDAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAVPRRNADIYYYTPQSKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQGKKLRSTREVRSDAPRRNADIYYYTPQGKKLRSTREVRSAAPRRNADIYYYTPQSKKLRSTREVRSAAPRRNADIYYYTPQSKKLRSTREVAENLAGTGLTLENFSFFKEPLGVDDPEKEIIRDAKLMRRVESPVPVPAAPTIEGKRTPKPKPPKGASPEPATPKSPPAKIKVKSVGSRLSNNGTPPAASVPKQPRRPQSTAATAASPAPASSPAPATANAVDNNNTAAWKKPRAAALALPQPPPLPPPQQLPLPLPPPLTLPPPPPPPLQSRPLQVPADTAVQNPQQVVQPCSMSCGRGAVPSLACVACLCLYHPACAGLPPALLQHQHFLCKNCRKTSSPPLEPPPLTHKSGATASAASGAGAGSGAVAARRPAPVSVPPTVSAKVRPDKRVMLRMKVAGGGADGSRVWAVAAPTAGSGAGGATSGALGATSGAVGATSGATGATSGGGGGATSGAGCGPPSGVRPTLPQSLAVLNGRRFIVVPRSLVNSDQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -