Papo026206.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- -
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010001576.1:5957808-5958536[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.3e-08 1.1e-05 25.6 0.0 3 36 17 50 15 56 0.92
Sequence Information
- Coding Sequence
- ATGCCACGCAACTATTCTAGAAAAACAGACAGACAGGATTGGGATAAAACCTCCATGGAAAAGGCTATTGAAGCTGTAAAGAATAATGAAATGGGCTGGCTATTGGCTTCTAAAGTGTTTAACGTCCCACAATCGACTCTTAGAAGACATGCACTGAAACAAAATAAAGTCTTAGCTCCAACTACAAAAGGTTTGGGTAGGTACAGGAGTGTCTTCACATATGAAATGGAACGAGAACTGGTAGAACATATTAAATTACTAGAAACGAGATTGTTTGGATTCACAAGAAAGGAAGTTTTGGAATTGGCGTACCAGTTTGCAGACGTTAATAATATTCCTCATAACTTCAACAATGAAAAAAAGATGGCAGGCAAAGAATGGTTGGCTGGATTTCGACGAAGACACCCGGACATATCCTTGAGGAAACCTGAAGCGACTTCAGCTGCAAGAGCCCAAGCCTTCAACAAGCCCCAAGTAGCACTGTTTTTCAACACTTACCAAGACATTATTCAGAGCAACAACATTTCTCCACATAGGCTCTACAACGTCGATGAGTCAGCATTATCAACAGTCCAGAGACCCCAAAAGGTCTTTGCTACTACTGGGCGTAAGCAGGTTGGGGCTTTGACTAGTGCTGAAAAGGGGTAG
- Protein Sequence
- MPRNYSRKTDRQDWDKTSMEKAIEAVKNNEMGWLLASKVFNVPQSTLRRHALKQNKVLAPTTKGLGRYRSVFTYEMERELVEHIKLLETRLFGFTRKEVLELAYQFADVNNIPHNFNNEKKMAGKEWLAGFRRRHPDISLRKPEATSAARAQAFNKPQVALFFNTYQDIIQSNNISPHRLYNVDESALSTVQRPQKVFATTGRKQVGALTSAEKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01430743;
- 90% Identity
- iTF_01119269; iTF_01155122; iTF_00048564; iTF_00001122; iTF_00874402; iTF_01178475; iTF_00300147; iTF_00874403; iTF_01430743; iTF_01156348;
- 80% Identity
- -