Papo002137.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- -
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010000160.1:319701-320684[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-11 4.8e-09 36.4 0.0 2 37 16 51 15 55 0.94
Sequence Information
- Coding Sequence
- ATGGTTCGCACGTACAGAAGAAAGACTGATGCCGGAGAATGGTCTCAAGAAAAAATGAAAGAGGCTGTAAATAAAGTCCAGAACAAAGAGTTGACCTTACGTAAGGCTGCTGAGATTTTTGCAGTACCGTTCACGAGCTTACAGAGAAGAGTTACTTTATCCAGGGGTATTATTAAGCGTCGAGGTGGACAGCCAGCTTTAGATGAGAACGCAGAAAAGAAGTTAGCTGACCGGCTATTGCACTTGGCAAGTCGTGGCTTCGGAATTACACCCAAAGCGGTACGTAAGTACGCGTTTGAATTTGCAGAACGTCAaaacataaaacacaaatttgaCAGAAATGCTGGAATGGCTGGCCAGGACTGGTTTCATCGCTTcatgcaaagaaataaaaaattaactattcgGAAGCCGGAGGGTCTGTCAAGAGCAAGGTGTGATGGTATGAAGAAGGAAAAAGTAGCAGAATTCTTTAATACTTTGGAAACAGTAGTAGATAACAACAATTTAAGAGGAAAACCTGAATGTGTATACAATGTTGATGAAACGGGTATGCCGCTTAGTAACCGCCCACCCAACATTTTAGCCCAAAAAGTTGCTAAAGATGTTGTCAGCATGACTAGTGTTGAACGAGGTGAAAATGTAACCGTTCTAGCCTGTATGAATGCAGCAGGACAGTACATACCTCCATTTGTTCTATTCAAAGGTGTGCGTAAACGTGACGATTTTCTCCTAGGTATGCCACCTGGTACTGAAGTTGCCATGACAGAAAACGGCTGGGTAGCCGAAGAAGCTTTTAAGTTGTGGCTGCAACATTTCAATCGCTACCGGACCCCAGGAAAAGTAGTTCTAATTTTGGATGGGCATGCGTCTCATACCAGCTACTCAGTGGTAGACTTGTGTGACTCTTTCGAAATTGAACTTGTACTTCTTCCTCCACACACATCACATGCCCTGCAACCGCTCGATGTATCGTTTTTCTAA
- Protein Sequence
- MVRTYRRKTDAGEWSQEKMKEAVNKVQNKELTLRKAAEIFAVPFTSLQRRVTLSRGIIKRRGGQPALDENAEKKLADRLLHLASRGFGITPKAVRKYAFEFAERQNIKHKFDRNAGMAGQDWFHRFMQRNKKLTIRKPEGLSRARCDGMKKEKVAEFFNTLETVVDNNNLRGKPECVYNVDETGMPLSNRPPNILAQKVAKDVVSMTSVERGENVTVLACMNAAGQYIPPFVLFKGVRKRDDFLLGMPPGTEVAMTENGWVAEEAFKLWLQHFNRYRTPGKVVLILDGHASHTSYSVVDLCDSFEIELVLLPPHTSHALQPLDVSFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01183746; iTF_00888170; iTF_00910444; iTF_01043598; iTF_01158646; iTF_01158647; iTF_01158648; iTF_01158638; iTF_01158651; iTF_01158652; iTF_01158653; iTF_00984960;
- 90% Identity
- iTF_00888170; iTF_01158735; iTF_01158646; iTF_01158647; iTF_01157624; iTF_01158651; iTF_01158652; iTF_01158653; iTF_00984960; iTF_01183746;
- 80% Identity
- -