Papo027159.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- -
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010001624.1:1211942-1226183[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-09 1.1e-06 28.9 0.0 1 34 176 209 176 216 0.93 2 2 1.1e-09 2e-07 31.3 0.0 2 40 252 290 251 295 0.83
Sequence Information
- Coding Sequence
- atgGATCCGTTAGACGGTGAAATGGTGATCTTCATAGGAAGATGTAAATGTTGCCTTAATGAAGGAGATTTAAAAAATTTGTGGACGCCTTATACGTTTGAGGGAGAAACCGAAATTTATGGAATGATGTTGACAGAATGTTTTGCTCTATCATGGCAGCAACCAGAGGAAAACGTGGGGTATATGGATATGATATGCACCTCTTGTATCTCTCGGTTACGCGATGCACTTGCCTTCAAAAGGGAAGTTTTAGTGAGTGAAGAGGTGCTGCATGAAAAACAAGATGAATTGTTTCTTTACACTACATTGAAAGTGGAGAAAGATTTAGAAGATGAGGAAGAAGAAACCGAGTTTAACGAAGTGGAATACTTAGATATCACAGACAGTTTAAACAAAGATGAATCATATGAAGAATCTTTATCAGATGAACAATTGCTGAGTTCAGATAAATCCATGCAAGTAGAACATAAAAGAAACTTGTCAAAAAAACTCCCAAAGGAAGAAAGGAACAAATACAAGCAGTATACTGACGAGGAATTACAAATGGCCATTGATGCAGTCCAGAACAATGAAATGTCACATACAGAAGCAGCCGAGTTGTTTAATGTGCCCAGGAAAACTATCTCTGCTAAGATCCACAATATTACAGACAAAGAAGAggAACAATCGCAGAGTGCAGAagaaaatagtaaaagaaaatgGCCGAAGAAACTACCAAGGAAAGACAGAAATAAAACATACAAGCAGTATACTGAAAAGACGCTGAGAATGGCTGTTGATGCTGTCCAGAATAAAGGGATGTCATGTAACCAAGCGTCAGAGATATTTAAGGTGCCCAGGAAGACTCTTGCATTTAGAGTTCAGAATACTATTGCCAAAAAAGAGGAACCAGATGATGATGACGCCTCAAAAATAACAGACCAAGAAAAACACTACAAACTCGTAGAGGAAATTAAAACTATACTCACCTACACAAACGCTATACCATACAAATCGAAATTGTCAAGGTACTACTGTGCATACTGCTCTACCGATGGACCGGTTTTTGATGAACCCGATGATTTGAGGACTCACACTAAAACGAAGCATGTCGATGATCGGACCAAAGGCATAGATCAGATAATGAGACCACACTGGCTTAATGAGGTGTTAAGAATTGATATACATAGTCTCCATTGTACAGTTTGCTGTACAATCCTGCCGACTTGGAACGACATGTTCCGACATCTTGAAGATGTGCATGAGGTTTTTCTAGACGAGGCCTACAACAGAGTTATACCTTATATCCTCGCAAGGGAGCTGAAATGTGCTTTATGTGAAGAAGCCTTCCCGAATTACCACATGCTGGACGGACATATGAACGCCCATTATAGCAGTTACATTTGCTACGAATGCGGCGATACTTTCTTATCAGCGAACCGACTTAATAAACATGTGGAAGTGCACAGTACTGGGAGGTTCCCTTGCGAGGTTTGCGGTAAAGTGTACAATTTGAAGAAATACATGAGAAAGCACTTTGTCATTGTACATGGACAGAAGGACCAATACAAATGCACATACTGTCCGGAAAGATTTTCTAGAGCATTCCAGAGACATCAGCATGTACTTGAAAAGCACAAAGAGATGGTCAAGATAAGGACTTGTGAGATCTGCGGAAAGACTTTCGACTGGATGCCCTACTTCTGGGCTCACATGAGACGCAAGCATGGTAAAAAGAGGAATTACAAATGCAAACAGTGTGACAAAAGCTTCCTTATGAAGTATCAGTTgagggaccatcaagaaaagcATTTGGAGGAGAGGAACTTTGTTTGTGATGTGTGCAGTGAGAGATTTAAAACTAAAGCGGGCTTAGTGCGACACTGTCAGCTGCATCATAACTTTCCAACCTCAAAATGTCAGACCAGTCAAACAGTTAAATAA
- Protein Sequence
- MDPLDGEMVIFIGRCKCCLNEGDLKNLWTPYTFEGETEIYGMMLTECFALSWQQPEENVGYMDMICTSCISRLRDALAFKREVLVSEEVLHEKQDELFLYTTLKVEKDLEDEEEETEFNEVEYLDITDSLNKDESYEESLSDEQLLSSDKSMQVEHKRNLSKKLPKEERNKYKQYTDEELQMAIDAVQNNEMSHTEAAELFNVPRKTISAKIHNITDKEEEQSQSAEENSKRKWPKKLPRKDRNKTYKQYTEKTLRMAVDAVQNKGMSCNQASEIFKVPRKTLAFRVQNTIAKKEEPDDDDASKITDQEKHYKLVEEIKTILTYTNAIPYKSKLSRYYCAYCSTDGPVFDEPDDLRTHTKTKHVDDRTKGIDQIMRPHWLNEVLRIDIHSLHCTVCCTILPTWNDMFRHLEDVHEVFLDEAYNRVIPYILARELKCALCEEAFPNYHMLDGHMNAHYSSYICYECGDTFLSANRLNKHVEVHSTGRFPCEVCGKVYNLKKYMRKHFVIVHGQKDQYKCTYCPERFSRAFQRHQHVLEKHKEMVKIRTCEICGKTFDWMPYFWAHMRRKHGKKRNYKCKQCDKSFLMKYQLRDHQEKHLEERNFVCDVCSERFKTKAGLVRHCQLHHNFPTSKCQTSQTVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158611;
- 90% Identity
- iTF_01154586;
- 80% Identity
- iTF_01154586;