Papo019243.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- retn
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010001207.1:2124620-2369236[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1 3.3e+03 -0.8 0.3 14 37 68 90 56 96 0.69 2 2 2.3e-26 7.2e-23 81.4 0.0 1 89 206 292 206 292 0.96
Sequence Information
- Coding Sequence
- ATGGCCGACGCCGACCGTGATTCCGACCTTGGCGACGATAGTCCAGTGTCGGCACGGTCAGAAGGTGAATCGTCTGGAGAGCAGTCCTGTGAAAGCTCGGATGAGGGTGTGGGCCGGGACGCACCAGCACCCCATCAGCCCCACCAGCACCAACCCCACCAGCATCAACACCAGCCACATCAATCGCTGCAGCCGCTTCAGCACCAGCAGCACAACATGAACCACCATGCCGCGATCAACCACCAGCCGATCAATAATCACCAATTGAACCACCCTCATCAAAGGAATTCGCCGCGCCCACTTGAGAGGGAGTTGAAGGTCCGCGATGACTTTGAATCGCTCAAGACTTCGCTCCATCCGCACCTCTCGTCACTGGCCTCTTTGGCGCAAGGAGCACCTTTGTCGACCCCCAGTAGCGTGTTTGCGCTTGCGGGAGCGGGGGCCACTGGGGGGTTCCCATATGCGCCCCCCGCTTTCCTAGCACCCGCGCCGCCGCCCCCCGCGCAGCCCGCTGGCTCcgcgtcttcatcatcatcagaagGCAGCGCTGCTGGATGGAGCTTTGAGGAGCAGTACAAGCAGGTTCGTCAGTTATACGAGATCAGCGACGATCCGCAGCGGAAAGAGTTCCTGGACGATCTTTTCTCCTTCATGCAGAAGCGAGGCACTCCTATAAACCGGCTGCCTATAATGGCGAAGTCGGTGCTCGATTTGTACGAGCTATACAACCTGGTGATAGCCCGCGGCGGTCTAGTGGAGGTCATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGCCTGCGACTGCCGTCCTCTATCACGTCCGCCGCTTTCACATTGCGCACACAATACATGAAGTACCTGTACGACTATGAGTGTGAGAAGAAAAACCTTTCAACTCGCAGCGAGCTGGATGCGGCCATCGAAGGCAACAAGAGGGAAGGACGGCGCGCGTCAGGGCAGTACGACGCGCAGGCGGCACTCGCTATGCCGTCGCTGAGCCGCGGCGTGTCGCTGTCGATGCCGCTGGCGCAGCCGCTGGCGCTGCCGCTGGGCGCCGTGCCCCGCCTGCCCATGCACGCGCCGCACCTCCACAACCACGACATCGAGTTTCGCGTGCGCGAGTACATGAAGATGATACAGCAGCAACGCGACCTCATCAGAAACGGCTCGGAGTCACCGCCTGGCAGTGGCGGCACAATGATGTCGCCCCGTGAGGCTGCACTCAGTGCCATCGACGTGTCACGTCTTACTCTGTGGTCGCtctacaacaacaacaacaacaacagccCGCAGCCGGACCTCGAGCCGCAGCGGTACGACGAGGCGCTGAATCTGAGCGAGAGCCCGAACTCGAGCACGAGCGGGAAGCGCGAGGCATGCCGatcgccgccgccgcccgccaaGCGCCGCACGCCGCGCCCGCCCTCCCCCCGCGCGCCCTCTCCGCGCCGCGCACTGCCCGCGCACCCGCACGCGCACGGGCACGCGCACGCACCCGCGCCCGCGCCGCAGCTCAACGGCAACGCGAACGGCGTCAACGGCGCTGCCTTCAAGATTACCTCTAGAGGTGACGCCACCACAGGCGACCAACAACTTGTCGTCTCGATAGAACTCAACGGAGTCACGTACGAAGGCGTTCTTTTCCCCTCACAAAATGGAAACGGACAGAATGGTCACAGGCAAATggtttcttaa
- Protein Sequence
- MADADRDSDLGDDSPVSARSEGESSGEQSCESSDEGVGRDAPAPHQPHQHQPHQHQHQPHQSLQPLQHQQHNMNHHAAINHQPINNHQLNHPHQRNSPRPLERELKVRDDFESLKTSLHPHLSSLASLAQGAPLSTPSSVFALAGAGATGGFPYAPPAFLAPAPPPPAQPAGSASSSSSEGSAAGWSFEEQYKQVRQLYEISDDPQRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALAMPSLSRGVSLSMPLAQPLALPLGAVPRLPMHAPHLHNHDIEFRVREYMKMIQQQRDLIRNGSESPPGSGGTMMSPREAALSAIDVSRLTLWSLYNNNNNNSPQPDLEPQRYDEALNLSESPNSSTSGKREACRSPPPPAKRRTPRPPSPRAPSPRRALPAHPHAHGHAHAPAPAPQLNGNANGVNGAAFKITSRGDATTGDQQLVVSIELNGVTYEGVLFPSQNGNGQNGHRQMVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00318670;
- 90% Identity
- -
- 80% Identity
- -