Papo016729.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- rfx7.L
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010001125.1:2214236-2242020[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.2e-34 7.4e-30 104.0 0.0 3 78 150 225 148 226 0.98
Sequence Information
- Coding Sequence
- ATGGAAAATACTACTCCATTTCAGCCATGGACCACTGACGATGATTCACAAAATGATAACACCGAAAGAGAATTAGTGGATGACGCGAAACTTCATCGGGAAAATGTCAATCATCCAAAACATAGGCAAACTGCGTCTTACGATAAAGAAAGTGTTGTCTCTTCAATCAGTATTGCTGGTCCATCGACCGCTTCAGGCGCCGTTACTAGTTCCAGCGCTAGTAAAGAGCCCGAGATGGACTCTAGTAAAGTAACTTCTATGCAACAAATCGTCGAGAACACTCTCAGCCAAGAAGGTCGACAAAGAGTGGCCCAACTTTTAGAAGCAGTAGAGGCTCTGAGTGGTGCTGAGAGACTTTTACTGTATCTTCGTTTGCCTACGGGTGTGCCTCCTCATGACCCTTTGAAGCAGCCAATAAATCCATTAGGATCTAGAGCTGAGCTTCAGCAAACAGTAACATGGATACAAACACATTTGGAGGTTGATCCTGACGTTTCTCTACCAAAGCAAGATGTTTATGATGAGTATATAGCTCACTGTATGAGCAGCAACATGAAGCCTTTGTCAACTGCAGATTTCGGCAAAGTAATGAAGCAGGTGTACCCAAGTGTACGCCCGCGTCGTCTTGGAACTCGCGGAAACTCTAGGTACTGTTATGCCGGTCTTCGTAAAAAGATCAAGCTGGAAGTACCTCAGTTACCAGATTTGGGAGAGTCGTCAAAAGAACAAACTGTAACTTCTAGAGAAACTGAGAGAATTGTTTGTGATTGGGCTGAAAGTAAACttgGAGTAAAATTCGGGAGTATAGCAGAGCTATCACGGCATTTAATGTCTGTTTGTGTGAGTCAACGCGCGCCGCTCGGTCCGGCGAGTGGATCCCCTCCACCACTAACGCACGGTCCTGCAGATGACGGTTCCGGTCGACaactaataaaacaattaaaacgtAAATTACAGACGCAGGGTACACCAGGGCGACCGAAGAAAAACAAAAGTCACGAGGTAACTGGGGAGTCCCCTCCATCAACTTCATATGTAAGTGAACATCCGTCTGTAAAGCATGAAAGCGAAATGATTCCAGAAACAAGTTACGGATATCAACCGCCATATATTCCTGTATACGATGTGCGCCCATCTTTTCCACCTTACGGCGCCCCACCTCGTGCCCACCCACCACACATGACGCCCACATCGCATACTATGTCCGTCCATGAATACCGACCGGACCCATATGTTTTCGAGCCTCCATATGCTCCTCGTGACTTATCGTTACCTACAGATACGGCTCATAATTTACCTATAAACCTCAGCAGTGATGCTTCCCTTGATTTATCCACCGAACGCACCGAACTTCAACGACGTAGACCTCCAGAACCTCCACCGGCCCGCCTGCCACTTCCTGGTAAAAAGCTCATACTTGAAACTTACCAAAGTGAAACGCAGGCAAGTTCTCCTCGGTCAGTTCAAAGTGACACACGTCCAACGTCTCACGTCACCGAAGAGTTTCCGCGGACAGAATATTTACCAAAAAAGATGAGAGCCGCTGAAATTATGGGTGGTAAGTTAGCTGCCGCACGTCAATCCTTATCTACAGCCGAAACAGCTTCACCATCGGTACCCACTGCTGCTGAAACATCCGCTCGTTCCGAGGGTGCTTTTTTAGAGGATCCAAAAAACTTAACGAGCCGGTCCAAAAGCACCGCCGCGGCGCTGGCTCGGGAAGAACAGGAGGCGGCGAGTCCGATACAGTCGGTAAAAGCTCTGACGCCTAAGTGCGAACGCTCCAAACTTCGGAAGTTATGTTGTCGAACGAAGGCACCGTCCCCTAATAAAACAAATTTGCCTGAACGATCTACCTCACCTGAGTCGTGTTGTGGTTTAGTCGAAATTAACATCAAAACTGGAATGATATGCGAAGAAAAACACTCAGAAATATTAAATAGAGAGCGCGTCATTAGCATATGTAATATAGATAAACATGATTTAGACGATTACCTCAATGAAGGCAATAGTCAAGAACACGAAGAAGAATTGTTGCAGTATTTTAACCACCGCGATGCGGACCACGAAGCAACAGTGCAAGCAAATTCGACTGGTAATACAGTCCCTTTTTTAGGAACAGGACAAGACCCACAAGACGAGCACAGCCAAGGAAAAAGTGAAAAAATATCACAATTGCGTGAACTATTagcaaagaatttaaaaaatcaaagtgGGTCTACACAAAATACTACTACGGATCAAGATACGCACTTGCCAGTTGATAACTCTCAAGAAGATGTTAATAAGTCAAATGTGTCTGTGACTGAAGGAGCTTTTAAACCTATTTCTGGAACCAGTGTAATAGATTTGATGAATGGAACAGCTTTGTCTAAtgcaaatgaaataaatgataataacaaACATTGCAATTCGAATCCCAATGAAAACGGTGTATCCGTTCCGTATGGCGCCAATACACCAAATCAATTAATGACAAATATTGGTGGTACGCACCTATTTAACGGCAACTGCCATGAACCACAAAGTCCTACTACTAGAACCCAGCAATATGAATTTGTACCAATATCAGATGCATGTCACTCTCCTGGCAATTTTCATTCGAAATCACCGCTTGGATTTGGAGAAAGGGGCCAAAGTCCTTCGAAGGCAAATAAATCTTTAATAATGGGTGGATCCCTTCAAACTTCGCCGATTTCGCATAGCACTGCTGCTAGTCCATTTGTTAGCCCCAGAAATACTCCTGTACCTAGGTCTCGCCTTTGTTCGCGACCaacaccaaaacttaatggtcgAAAAAGGCGTAACCCGTTATCTCTTGGTATGACTGATTCATGTCCTAAGCAGTTTGCAGTACCAAATGATCAAAAATTTATGTCTAAAACAGCTGTTTGCAGCTCTAATATCAAATACTGTCAACCGATGTCAGCTCCACCATCACCTAACCTTATCACTCAGTATAAAACACAGATGCTGCAAAACTCCTCCTTTATTCCAAATGGCACGAGTAGTGTTTGTCTAAACTTTGCCCCAAATGCACTTTTTCTTCGAGAAAACGTAAATGGAGATCTAACTCAACCTCTATCTGCTGATCCTCTTTCACGAGAAGTAAGTCAATTTTTTCAAGAACCTGTTACGTATGGCTTAGGACTTGATACATCTTATAGATCTCAGTCCGTACCGCTTAAACCAGGCATAAATAATATTAGTCTCTTGAGCTATAACAATACACCTGTAGGCTCAGTACCTCCGACACCTGTGCCGAATGAATTTAGTGACTTCGGATCACTTGCTGATACCTGTGACATATCGAAGGCTGGTCTGAACCCGGAGACATTAGATAAAATCTATGATGCGATAGACAGTAGCAATGATGTACTTAATGCAGGTGCAACGCCAGGTCTTCTGAGTTCCAATGATACTTTAACTAATGGTTGTGATACTATCCCAGAAGAACAGATTCTAACCGATGAACAGTTAAATTCCTTTATTCCCACGGGTGGTGATCTTCTCGATAGAAGTGGTCAGTTTAATCAATCTTTTACAAATGATAACACTGCTGCTAGTAATGTAGAAGAATTTTTAAAAAGAACCAATAGTATTGAATTAGATTTAACTGAATTGGTGCCAGATAAAAGCAAATATTATACATCGCGTTCAGTACCAAGCACACCATTACCGTATAAACGTACAGCGGCGAATTTACAGATCGACTCACGACGTTCCAGAGAATTATTTACCACAGAGAATTATTCCAATGTTTCTAATGGTATTTCCTCAAAATCCGTGCCATCAACACCGCAACTTGCTGAAGATAGAAGTGTGTTCAGTTACAGTAATAGAGATTTTCTTATAAATGGCAACTCTGTAGAAGTTTGTGCATCAACTCAGATTCAGAATATTGTAGACAACGATCAAGGACTCTCTTCGCCATTAGATATGTTACGTGAAGATATATTGGCACCATTAACCTCTTCCGACTTATTGGCTGATCTCGATAAAATGGATGGACCTCCGTACGTTGACCTCTAG
- Protein Sequence
- MENTTPFQPWTTDDDSQNDNTERELVDDAKLHRENVNHPKHRQTASYDKESVVSSISIAGPSTASGAVTSSSASKEPEMDSSKVTSMQQIVENTLSQEGRQRVAQLLEAVEALSGAERLLLYLRLPTGVPPHDPLKQPINPLGSRAELQQTVTWIQTHLEVDPDVSLPKQDVYDEYIAHCMSSNMKPLSTADFGKVMKQVYPSVRPRRLGTRGNSRYCYAGLRKKIKLEVPQLPDLGESSKEQTVTSRETERIVCDWAESKLGVKFGSIAELSRHLMSVCVSQRAPLGPASGSPPPLTHGPADDGSGRQLIKQLKRKLQTQGTPGRPKKNKSHEVTGESPPSTSYVSEHPSVKHESEMIPETSYGYQPPYIPVYDVRPSFPPYGAPPRAHPPHMTPTSHTMSVHEYRPDPYVFEPPYAPRDLSLPTDTAHNLPINLSSDASLDLSTERTELQRRRPPEPPPARLPLPGKKLILETYQSETQASSPRSVQSDTRPTSHVTEEFPRTEYLPKKMRAAEIMGGKLAAARQSLSTAETASPSVPTAAETSARSEGAFLEDPKNLTSRSKSTAAALAREEQEAASPIQSVKALTPKCERSKLRKLCCRTKAPSPNKTNLPERSTSPESCCGLVEINIKTGMICEEKHSEILNRERVISICNIDKHDLDDYLNEGNSQEHEEELLQYFNHRDADHEATVQANSTGNTVPFLGTGQDPQDEHSQGKSEKISQLRELLAKNLKNQSGSTQNTTTDQDTHLPVDNSQEDVNKSNVSVTEGAFKPISGTSVIDLMNGTALSNANEINDNNKHCNSNPNENGVSVPYGANTPNQLMTNIGGTHLFNGNCHEPQSPTTRTQQYEFVPISDACHSPGNFHSKSPLGFGERGQSPSKANKSLIMGGSLQTSPISHSTAASPFVSPRNTPVPRSRLCSRPTPKLNGRKRRNPLSLGMTDSCPKQFAVPNDQKFMSKTAVCSSNIKYCQPMSAPPSPNLITQYKTQMLQNSSFIPNGTSSVCLNFAPNALFLRENVNGDLTQPLSADPLSREVSQFFQEPVTYGLGLDTSYRSQSVPLKPGINNISLLSYNNTPVGSVPPTPVPNEFSDFGSLADTCDISKAGLNPETLDKIYDAIDSSNDVLNAGATPGLLSSNDTLTNGCDTIPEEQILTDEQLNSFIPTGGDLLDRSGQFNQSFTNDNTAASNVEEFLKRTNSIELDLTELVPDKSKYYTSRSVPSTPLPYKRTAANLQIDSRRSRELFTTENYSNVSNGISSKSVPSTPQLAEDRSVFSYSNRDFLINGNSVEVCASTQIQNIVDNDQGLSSPLDMLREDILAPLTSSDLLADLDKMDGPPYVDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01154759; iTF_00204114; iTF_01158455; iTF_01157407; iTF_00194917; iTF_01402471; iTF_01142152; iTF_01141385; iTF_01144298; iTF_01147841; iTF_01337514; iTF_00840070; iTF_01138704; iTF_01140677; iTF_00197111; iTF_01148572; iTF_01147171; iTF_00957695; iTF_01495522; iTF_01129795; iTF_01494054; iTF_00249452; iTF_01115455; iTF_01175950; iTF_00922645; iTF_01149312;
- 90% Identity
- iTF_01158455; iTF_01157407; iTF_01154759;
- 80% Identity
- -