Pahi001376.1
Basic Information
- Insect
- Parelbella ahira
- Gene Symbol
- -
- Assembly
- GCA_018244795.1
- Location
- DWME01000589.1:3153-6628[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.002 0.15 13.2 4.1 1 23 150 173 150 173 0.98 2 18 4.7e-05 0.0033 18.4 1.0 1 23 182 205 182 205 0.96 3 18 0.017 1.2 10.3 0.6 2 23 218 240 218 240 0.97 4 18 0.00094 0.067 14.3 1.1 1 23 249 272 249 272 0.96 5 18 1.7e-05 0.0012 19.8 1.9 1 23 285 308 285 308 0.97 6 18 0.00015 0.011 16.8 0.7 2 23 335 357 334 357 0.97 7 18 0.00027 0.019 16.0 3.5 2 23 367 389 366 389 0.97 8 18 0.027 1.9 9.7 0.8 2 19 394 411 393 414 0.92 9 18 0.0012 0.082 14.0 0.5 2 21 419 438 419 441 0.95 10 18 0.17 12 7.2 1.9 3 23 451 472 450 472 0.95 11 18 0.0056 0.39 11.9 5.7 1 23 477 500 477 500 0.94 12 18 0.0001 0.0071 17.4 2.6 2 23 512 534 511 534 0.97 13 18 0.02 1.5 10.1 1.7 1 23 561 584 561 585 0.94 14 18 0.33 23 6.3 0.3 2 23 591 612 590 612 0.93 15 18 0.026 1.9 9.7 2.2 2 23 616 637 616 637 0.98 16 18 3.9 2.8e+02 2.9 1.8 3 23 645 667 643 667 0.90 17 18 0.033 2.4 9.4 0.1 1 23 703 725 703 725 0.96 18 18 0.21 15 6.9 2.0 1 23 731 754 731 754 0.96
Sequence Information
- Coding Sequence
- ATGTCTGTTATTGAAGAGAAACTTGATATTAAAACTGAGAATGAATATAAACGGATGGACCCAACTTCATTTTTGCCAGAAGAGGAGATGAGTTAtgagattaaaaaaaagaaaaaaaagaagaaaaaggaCAAACAAGAGGATCCCTTTAAAGATATTGAGGAGAGGACAGAGACATCTACAACAGTAACATATTATGACGCCACTTTGGACCCTgaagttaatattaaagtagaGAATATTGAAGTGGAATTGGATTTTAATGATTTTGCCAATGACAGCGGCCTTATGCTAGAAGGACCCAACAGCGAGGACAGTCAAGAGCCAGCAGTAAAACTGGAACCACAAAATAAGGAGGCGGTCTTGTTGACATTCGaaagtattataaatgaaaataaattatttggaatCAGTGAACCGCTGGACATGCCGCCTTCAGCGCCCAACTACGTATGCAAGGTTTGTCACCTAGTCTTTCAATCGACGAAAACGTTAAGAATGCACCAAAAACGGAAACACAAAGTGTACCGGAGATCGTTCAAGCACATTTGTGATTACTGTGGAATGTCGTACGAGCAGAAAAACAGCTTAGTTGCtcacataaaaagaaaacatggcCCGAACTCTGTACCAGATGACAGGGAAGAAAGAACTTGTGATGTATGTGCTCTAGTTTTTAAGGGACTTAATAGGTTAAGAATGCATATGAGAAGAAAACACGGCTCCTTTGAAGATTCTTTCAAACATGTTTGCCAGGAATGTGGTCTCAcatatgataaatatagaagtttAATAGTTCATATACAAAGGAAACATACTAgcgataataaaaagaaagttctGGAAGAATGGTTTAGTTGCCCGTTTTGCCCAAAAGTTTTTACAAGACGGGAAACATATTCAAGACATGTGCAGAGAAAGCATCGAATTGACGATGAAGAGAATAGAGATGTAAAGCCTGATTTATTGGAAAATTGCAAAAACGAAGAAACTGGAGAGATCACTTGTAAAGAATGCCCTCTAGTCTTttcatcaataaattttttaaagttacacaTGAGAAGAAAACATAACGCCTTACGAGAAGATTTCCGACTGAAATGCAAGATTTGTCACCtttcttacaataaaattgagAGTCTCAAAAGGCATATTAGGCGGAAACACGACAAGGGTTCATACTGTGAAGTTTGTAATAAGCAATTCGATACTAGAGAATCGTACTTAAATCATTCGCATATGAAGGCAATCAGAGAGTGCACCATATGCGGACTGATCTTCGCGTCTAAAGGCGGCTTGGGGAAACACATGCGGTGTACTCACAAAGTGGACGAACCGAAAACCGTGTTCTGTTCATTGTGTAATGAAGGGTTCCACGATAAAAGGCAACTCAAACCACATTATATGAAAGTGCATTTAAAAGTGTCGTACACATGTCACTTTTGTAGTAAGCAATTCAAGGCGAAAGAGAGTTATAGgagacatattttatttaaacacccCGCGAACAGCGAAGCTAATAGCCAACTTCAGAAATGTGAACATTGCCCGGAGATGTTTCGAGATGAGTTTGAGCTGTGTAAACATATTAACAGTGCGCACGGCTCGAAGGAATCAGACGCTGGTGCAACGGATAgtgatatcaaaattaaaaaagaggAACCGGATATTAAAGATTGCTTCCAATGTACAAAGTGTCCCGAAAACTACCTAACTTGGGATCAGCTGAGGCTGCACTACGAGCAAAACCACCACATGACCGAGGACACCCAGTGTCAGATGTGTGGTAAAATTATGCCAGCGAATGAACTTCAAAAGCATATTAAAAACACTCATGCACTAGCCAAATGCAGATATTGCGAGTTTCAGACGACGAATCGTGCTAGCATGACGCAGCATATGTTGAGACATAAAAACGCGACGACATTGCATTGCGATTTCGCCGGCTGCAAGTACAAAACGTTCTACGAGGTCGCCATGGAGAAACACAGGCGTAAACATCGGGACATCGGAGTCAAACTCCAATGCTCTCAGTGCCCGTTCCAATCCATGAACAAGTATATACTTAAGTACCACGAAGAAGCTCATATGACTGGTAAAAAAAGATACGCTTGCGACCAGTGCGACTATGCGACAATCTTGCCAGCTAATCTAGTACAACATAAGTATAAGCATTCGTCAGAGAAAAGGTTCAAGTGCGAAGTGTGTCCGTTCGCCACAAAGTACAACACGTCGCTACGCTTCCACGTCAAGAAGAAACATTGTGATCTCCCTACTTTCAGTTAA
- Protein Sequence
- MSVIEEKLDIKTENEYKRMDPTSFLPEEEMSYEIKKKKKKKKKDKQEDPFKDIEERTETSTTVTYYDATLDPEVNIKVENIEVELDFNDFANDSGLMLEGPNSEDSQEPAVKLEPQNKEAVLLTFESIINENKLFGISEPLDMPPSAPNYVCKVCHLVFQSTKTLRMHQKRKHKVYRRSFKHICDYCGMSYEQKNSLVAHIKRKHGPNSVPDDREERTCDVCALVFKGLNRLRMHMRRKHGSFEDSFKHVCQECGLTYDKYRSLIVHIQRKHTSDNKKKVLEEWFSCPFCPKVFTRRETYSRHVQRKHRIDDEENRDVKPDLLENCKNEETGEITCKECPLVFSSINFLKLHMRRKHNALREDFRLKCKICHLSYNKIESLKRHIRRKHDKGSYCEVCNKQFDTRESYLNHSHMKAIRECTICGLIFASKGGLGKHMRCTHKVDEPKTVFCSLCNEGFHDKRQLKPHYMKVHLKVSYTCHFCSKQFKAKESYRRHILFKHPANSEANSQLQKCEHCPEMFRDEFELCKHINSAHGSKESDAGATDSDIKIKKEEPDIKDCFQCTKCPENYLTWDQLRLHYEQNHHMTEDTQCQMCGKIMPANELQKHIKNTHALAKCRYCEFQTTNRASMTQHMLRHKNATTLHCDFAGCKYKTFYEVAMEKHRRKHRDIGVKLQCSQCPFQSMNKYILKYHEEAHMTGKKRYACDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00673701;
- 90% Identity
- iTF_00025415;
- 80% Identity
- -