Pful033559.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Parascotia fuliginaria
Gene Symbol
-
Assembly
GCA_963082885.1
Location
OY720201.1:6517008-6518234[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.0005 0.054 15.0 2.3 1 23 51 74 51 74 0.95
2 10 0.00024 0.026 16.0 3.4 3 23 83 104 81 104 0.94
3 10 0.22 24 6.7 5.3 2 23 112 134 111 134 0.95
4 10 2.9e-06 0.00032 22.0 0.3 2 23 142 164 141 164 0.94
5 10 8.5e-05 0.0092 17.4 3.7 1 23 171 194 171 194 0.92
6 10 0.008 0.87 11.2 6.0 1 23 200 223 200 223 0.93
7 10 4e-05 0.0043 18.4 0.3 2 23 231 252 230 252 0.97
8 10 0.00011 0.012 17.1 0.8 2 23 260 282 259 282 0.97
9 10 4.8e-05 0.0052 18.2 2.7 2 23 289 311 288 311 0.92
10 10 2.2e-05 0.0024 19.3 4.4 1 23 321 343 321 343 0.97

Sequence Information

Coding Sequence
ATGGAGGAACCAAAAGAGGAGCGGCCGCCGCAACCAGTGATGAAGTTCATAAGCGTTAACAGCGAAATACTCACTAACGAACAACGAGAGATGTACGAATCTGTCCTCACTACTTGGAAACCAGTACTATTTCCCAAACAAATCAAGCGGTACATCTGCCAAAAATGCAGCAAGGAATTCAAAAATTACCAAAATTTGTATCTGCACACTACCCGCGTCCATTCTACGGAAGATTCCGCGGTTATTTGTGACAGATgtgataaaacatttaaaaataaacactattTATATATGCATAGAATGAATAAACATTATTCCGAAATGGAAAAATGTTACTGTCAGTTCTGCCTGCAGGAATTCCGGACCAGACGCGCGTTACATATGCATGTAAAACGTATCCATCCGAATACGTTGCCAGAAATTAGATGCCCCGAATGTGGCAAGGAATTCGCGGTCCCATATAAATTGAAACACCATATGGAACAGGTCCACAGGGAGGATAAGGAAAAACATGAATGCCCGGTCTgccataaattttataaaaatcccTTAAATCTGAACAGACATTTGTCATTCCAACACATGAATGTGACTAGGCATCCGTGTGTTTTCTGCAATCTAACTTTTAAATCACGCCATCATATGAAACGACATGTATTAAACATACACCCACCTTTGGAATCCAAAGTACAGTGTCCGGAGTGTctcaaagagtttaaaaatgaTCAATATTTGAAGGAACATATGCAGGTCCATTCTTCGCTCGATTCTAAAGTCAAATGCGATCTTTGCGACAAGATTTTCCATTCAGCTGTTCGTCTaaagaaacatataaaaattgtGCATCCAACCAAGCCAAAACTCCGTTGCGAGAAATGTGATAAGGAATTCGCGCACCCTCATTATTTAAGACGCCATTTTAATGCTGTGCATTTAGAATTAGATGAAACTGAATATCCTCACGAATGTGATCAATGTGGTAAAAAGTTTaaactcaaaaaatatttaaataaccatCTTCAGAGACATGAACAACAGCATTTGAAGAGGATATCACAGATGGTGAAGACTGTGATGGGGAAGAAAGAGGACAAGGTGGCTAAGGATGGACCTTTGAAGAAAAAGGGAAGACCACGTAAAACTAGAGAAGAGATTGAGTTTATTAAGTGCGAGCCTGTCTCCAGCTCGGAGTCAGAGTCTGGGGAAACGGAGAGCGAATCTGAGTGA
Protein Sequence
MEEPKEERPPQPVMKFISVNSEILTNEQREMYESVLTTWKPVLFPKQIKRYICQKCSKEFKNYQNLYLHTTRVHSTEDSAVICDRCDKTFKNKHYLYMHRMNKHYSEMEKCYCQFCLQEFRTRRALHMHVKRIHPNTLPEIRCPECGKEFAVPYKLKHHMEQVHREDKEKHECPVCHKFYKNPLNLNRHLSFQHMNVTRHPCVFCNLTFKSRHHMKRHVLNIHPPLESKVQCPECLKEFKNDQYLKEHMQVHSSLDSKVKCDLCDKIFHSAVRLKKHIKIVHPTKPKLRCEKCDKEFAHPHYLRRHFNAVHLELDETEYPHECDQCGKKFKLKKYLNNHLQRHEQQHLKRISQMVKTVMGKKEDKVAKDGPLKKKGRPRKTREEIEFIKCEPVSSSESESGETESESE