Ndro000271.1
Basic Information
- Insect
- Notodonta dromedarius
- Gene Symbol
- -
- Assembly
- GCA_905147325.1
- Location
- LR990187.1:3357564-3358778[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0013 0.091 13.5 2.2 1 23 53 76 53 76 0.95 2 10 2.3e-05 0.0016 19.0 3.0 3 23 85 106 83 106 0.94 3 10 0.061 4.2 8.3 5.3 2 23 114 136 113 136 0.95 4 10 2.9e-05 0.0019 18.7 2.0 2 23 144 166 143 166 0.93 5 10 0.032 2.2 9.2 8.4 1 23 173 196 173 196 0.93 6 10 0.0058 0.39 11.5 6.2 1 23 202 225 202 225 0.93 7 10 4.7e-06 0.00032 21.2 0.4 2 23 233 254 232 254 0.97 8 10 0.00092 0.062 14.0 2.2 2 23 262 284 261 284 0.96 9 10 8.9e-05 0.006 17.2 2.5 2 23 291 313 290 313 0.90 10 10 7.8e-05 0.0053 17.4 4.0 1 23 323 345 323 345 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAGGTAAAACCGGAACTGCCCCCCTCAGAGCCTCCAGTCATGAAGTTCATCAGTGTGAACAGCGAGGTACTGACAGAGGAACAGCGGGAGATGTACGAGTCCGTCCTCTCCACATGGAAGCCCGTCATGTTCCCAAAACGGGAGAAACAATACATCTGCCAGAGATGCAGTAAAGAGTTTAAGAACTACCAGAATTTGTATCTGCACACAACTAGAGTGCATTCGTCTGAAGAATCCGCCGTCATCTGCAACATATGCGACAAGACATTCAAAAATAAACACTATTTGTACATGCATAGAATGAACAAGCATTACTCGGAGCTCGAGAAGTGTTATTGCCAGTTTTGTCTGCAAGAGTTTCGTACGCGACGTGCATTGCATATGCACATCAAACGGGTGCACCCGGACACACTCCCAGAAATCAAATGTCACGAGTGCGGAAAAGAATTCTCTGTACCGTACAAACTGAAATATCACATTGAAGCCTGTCACCGAAATGACAGAGAGAAATTCCAATGTCACCTCTGTCATAAATTGTACAAGAACACGTTAAATCTGAACAGACACTTACATTTCCAACACACGCCCGTGGAGCGACACCCTTGCGTGTTTTGCAATATGACTTTTAAATCCCGCCATCATATGAAGAGACACGTATTGAACATTCACCCGCCTTTAGAGTCCAAAGTCCAGTGTCCGGAGTGTCAAAAGGAGTTTAAGAACGATCAGTACTTGAAAGAACATATGCAGGTTCACTCCTCTCTGGATTCCAAAGTCAAATGCGATTTGTGTGACAAATTCTTCCATTCTGCTGTGCGTCTGAAGAAACATAAGAAAATTGTGCATCCCACCAAACCAAAACTGAGATGTGAGAAGTGTGACAAGGAGTTTGCGCACGCGCACTACCTGAGAAGGCACAATAACGCTGTGCATCTAGAAATAGAGGAAACAAACTACCCTCACAGCTGTGAACAGTGCGGGAAGAAATTCAAACTGCTGAAGTACTTGAATAATCATTTGCAAAGACACGAGCAACAGCATTTGAAGAGGGTCTCCCAGATGGTGAACACGGTGATGGGGGATGAGAAGAACGGTCCGCTGAAGAAGCGAGGAAGACCGAAGAAGATAAAACCTGAGATTGAGTTCATTAAGTGCGAGCCGGTCTCCAGTTCTGAGTCGGAGACGGACACTGAGAGTGACTCAGAATAA
- Protein Sequence
- MEEVKPELPPSEPPVMKFISVNSEVLTEEQREMYESVLSTWKPVMFPKREKQYICQRCSKEFKNYQNLYLHTTRVHSSEESAVICNICDKTFKNKHYLYMHRMNKHYSELEKCYCQFCLQEFRTRRALHMHIKRVHPDTLPEIKCHECGKEFSVPYKLKYHIEACHRNDREKFQCHLCHKLYKNTLNLNRHLHFQHTPVERHPCVFCNMTFKSRHHMKRHVLNIHPPLESKVQCPECQKEFKNDQYLKEHMQVHSSLDSKVKCDLCDKFFHSAVRLKKHKKIVHPTKPKLRCEKCDKEFAHAHYLRRHNNAVHLEIEETNYPHSCEQCGKKFKLLKYLNNHLQRHEQQHLKRVSQMVNTVMGDEKNGPLKKRGRPKKIKPEIEFIKCEPVSSSESETDTESDSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01152446;
- 90% Identity
- iTF_00622241; iTF_01179731; iTF_01180562;
- 80% Identity
- -