Pful032259.1
Basic Information
- Insect
- Parascotia fuliginaria
- Gene Symbol
- -
- Assembly
- GCA_963082885.1
- Location
- OY720199.1:6031283-6034550[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.18 19 7.0 0.0 2 23 2 24 1 24 0.94 2 17 0.29 31 6.3 0.1 3 23 50 71 48 71 0.94 3 17 2.5e-05 0.0027 19.1 0.6 1 23 119 142 119 142 0.97 4 17 0.079 8.5 8.1 0.6 3 20 149 166 148 167 0.94 5 17 0.0087 0.94 11.1 2.2 1 23 205 228 205 228 0.91 6 17 0.025 2.7 9.6 2.3 1 23 233 255 233 255 0.93 7 17 3.2e-06 0.00035 21.9 0.5 1 20 261 280 261 283 0.94 8 17 0.13 14 7.4 0.6 1 13 289 301 289 306 0.86 9 17 0.02 2.2 9.9 0.6 2 23 349 371 348 371 0.94 10 17 0.024 2.6 9.7 3.5 1 23 440 462 440 462 0.98 11 17 0.0026 0.28 12.7 3.2 1 21 466 486 466 487 0.94 12 17 1.3 1.4e+02 4.3 1.0 2 21 497 516 497 517 0.92 13 17 0.033 3.5 9.3 0.9 1 23 524 547 524 547 0.84 14 17 7.4e-05 0.008 17.6 0.4 1 23 554 577 554 577 0.97 15 17 0.00027 0.029 15.9 0.2 2 23 583 604 582 604 0.96 16 17 0.0015 0.16 13.5 0.1 1 20 610 629 610 632 0.93 17 17 8.7e-06 0.00094 20.5 3.1 1 23 638 661 638 661 0.97
Sequence Information
- Coding Sequence
- ATGGTGTGCGTCTACTGCGCAGACCCGTTCGAAGACCCTGTAGAATTCAGGCTGCACATGAACAAGGATCATAGGACGTTTAACACTCGCATGGCATTCTTTCATTGTAGCGAAGGTTATATTAAAGTTGACTGCACAGACATAAACTGCAGAATATGCTCAGAAAAGTTCCAGAATCTGGAAGAAATAGCTGAtcatttattatctatacacaACAAACCTTTGAATTTGGATGTTGAGTATGGCTTACAACCGTTTAAATTGGAAAAGAATAAGTTATTGTGCGCTATTTGTAATGCAAAATGCCTTTGCATGCGGCAGCTTAGCAGACACACTCAAACCCACTTTTGGAGGTTCACCTGTGAAGCTTGCGGAAAGTCTTACGCTACCCTCACCACATTGCGAAGCCATATACGATACTCTCATATTGACAAAGAAAGGATTTGTCGGAAATGTAAAACCACATTCAGCTCCTtggaagaaaaaagaaaacatttagttGGATCTCCACGTTGCTGGTGCCATCTCTGTTGCATATGTGGCGAAAGATTCATGACTTACCATCTTAAACAGCTACACCTAACCGAAGTACACGACGTAAAGAAGAAAAGCTATACCTGTCCAGAATGCGGCGAAGTTTTTATCGATCGGAAAAGATGTAGAATGCACTTTAGGATTTTTCATACTGATGATAATTATACTTGCTCCTGTTGCGGCATGAAGTTTGAGACCAAACGGACACTTGAAGCCCATAGTGTTTCGCATACCATGGAGAAATTGTTCCCGTGTACAGTCTGCTCGAAATCGTTTCCGAGGCAGAAAAATTTGCAGCAACATATGTGGATTCATATGGAGAATAAACGATTTGAGTGTACGCTGTGCAGCAAGAAATTTAACCAAAAATTACAAGTCCGCAATCAGCAACATAGTGATCGGACGTTTCTTTTTGTTCTAGAAAAAAAGACCATCGCCGCGAGACGGAACGCGCGAACGATCATACAATATACCACAGCTTACCCCTTCAAGCTACCGGACACGTCCATGGTTTGTGTGTTCTGCTGCGAAAGCTACGACGACCCGTCGCTATTTAGGAATCACATGCGAATTGAACACCAAGTTTTCAAAATGCACATAGCATTCGCTCACATCCCTGAAGGATTTATTAAAGTTGACTGCACAGAACTTACTTGCAGGCTATGCGATCTCAATCTCCTAAATATACAGCAAGCGGCCGATCATTTAATAGCCTTTCATAATAAATCTATCAATTTAAATCATGATTTCGGTATGCATCCATTCGTTATAGAGAAGGATAAATATTCTTGCGCGATTTGTAACGAAAAACATTCCACTCTGTCTTTATTGAGTAAGCATATGCATAGCCATTTCGTACAGTATACGTGTGATACGTGCGGCAAGTCCTACGCGACTAAAACCTCTTTACATTGCCATATTAGATACAATTGTAGTACAGGACCGTCAATGCGAAAATGTAGGAAATGCAAAGGAGTCTTCAAATCTTTGAAGGAACGGCAAGAGCATTTAGAAAAATCCAAAAGATGTTGCCAACACGTTTGCAACTATTGCGGAGAGCGCTTTATGACGTGGACGATAAAACAAACACATATGACAGAAGTACATAATGTTGCTGCTAAAATTTACACCTGTCCGGAATGTTCGCTAGTGTTTCAACAACGCGATAAACTGAGAGCTCATTTCAAAATTGATCATACGAACAATTACGTCGAATGTTCGTATTGTGAGAAAAGGTTCGAGAATGATCGCGGTTTGAAAAAACATATCGTTATACACACGGGTGAAAGACGATTTATCTGTGCAGTATGTGCTAAAGCGTTTCCTAGAAAGTCGACGCTAGATCAGCATATGTGGATACACAGTGAGATTAAAAAGCATGAGTGCAAAATTTGCGGTAAACAGTTTAACCAGAAAGTCAGTTGGAGGACTCATATGAAATCGCGGCATCCTGATTTGTGTGATTTTTAG
- Protein Sequence
- MVCVYCADPFEDPVEFRLHMNKDHRTFNTRMAFFHCSEGYIKVDCTDINCRICSEKFQNLEEIADHLLSIHNKPLNLDVEYGLQPFKLEKNKLLCAICNAKCLCMRQLSRHTQTHFWRFTCEACGKSYATLTTLRSHIRYSHIDKERICRKCKTTFSSLEEKRKHLVGSPRCWCHLCCICGERFMTYHLKQLHLTEVHDVKKKSYTCPECGEVFIDRKRCRMHFRIFHTDDNYTCSCCGMKFETKRTLEAHSVSHTMEKLFPCTVCSKSFPRQKNLQQHMWIHMENKRFECTLCSKKFNQKLQVRNQQHSDRTFLFVLEKKTIAARRNARTIIQYTTAYPFKLPDTSMVCVFCCESYDDPSLFRNHMRIEHQVFKMHIAFAHIPEGFIKVDCTELTCRLCDLNLLNIQQAADHLIAFHNKSINLNHDFGMHPFVIEKDKYSCAICNEKHSTLSLLSKHMHSHFVQYTCDTCGKSYATKTSLHCHIRYNCSTGPSMRKCRKCKGVFKSLKERQEHLEKSKRCCQHVCNYCGERFMTWTIKQTHMTEVHNVAAKIYTCPECSLVFQQRDKLRAHFKIDHTNNYVECSYCEKRFENDRGLKKHIVIHTGERRFICAVCAKAFPRKSTLDQHMWIHSEIKKHECKICGKQFNQKVSWRTHMKSRHPDLCDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00282709;
- 90% Identity
- -
- 80% Identity
- -