Pful032352.1
Basic Information
- Insect
- Parascotia fuliginaria
- Gene Symbol
- -
- Assembly
- GCA_963082885.1
- Location
- OY720199.1:6625171-6630832[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.042 4.6 8.9 0.6 1 23 37 60 37 60 0.93 2 19 3 3.3e+02 3.1 0.1 2 23 86 108 85 108 0.91 3 19 0.028 3 9.5 3.0 3 23 133 153 131 153 0.96 4 19 0.0003 0.032 15.7 0.3 1 23 157 179 157 179 0.97 5 19 0.0036 0.39 12.3 0.5 1 23 186 209 186 209 0.97 6 19 0.0048 0.52 11.9 1.0 2 23 217 239 216 239 0.92 7 19 6.4e-06 0.00069 20.9 0.8 2 23 245 267 244 267 0.97 8 19 1.2 1.3e+02 4.4 1.0 1 23 273 296 273 296 0.89 9 19 1.3e-05 0.0014 20.0 1.7 1 23 302 325 302 325 0.98 10 19 0.29 31 6.3 2.2 1 23 427 450 427 450 0.92 11 19 0.23 25 6.6 0.1 2 23 477 499 476 499 0.96 12 19 0.0005 0.054 15.0 0.8 1 23 521 543 521 543 0.98 13 19 3e-05 0.0033 18.8 0.3 1 23 547 569 547 569 0.98 14 19 0.043 4.6 8.9 3.8 1 23 574 597 574 597 0.91 15 19 1.3 1.4e+02 4.2 5.1 2 23 605 627 604 627 0.88 16 19 0.00015 0.016 16.6 2.2 2 23 635 657 634 657 0.95 17 19 4.8e-05 0.0052 18.2 1.2 1 23 663 685 663 685 0.98 18 19 7.4e-05 0.008 17.6 2.5 1 23 691 713 691 713 0.99 19 19 9.7e-05 0.01 17.2 4.8 1 23 719 742 719 742 0.97
Sequence Information
- Coding Sequence
- ATGTATCGCGAAAAGCATCTGCCAGAAATGAAGAAACAGTGGCATAATCTGACCACTTTACTAAAGTGTTCGAATGTCACCCCGTTTAAGGATAGAAATGATGCTGGATACGTTTGCGCCTACTGCTTCAAAGCATACCCCAATCCTGATATACTAAGAAGTCACACACACAACGATCATGCAAAAGAAAAACCGTCATACAAAGCAGGATCGGGCATCGCCAGTTTTGTGGCTTTTCTCGATATAGTTGACCTAAAATGTACGCTTTGCGAACAACCAATGGATTCGCTCCAAACTTTAACAGAGCATCTAGTATCTGTCCacgaaaaaaaatactatctaAGCGTCACAGATTATTTCCAACCTTTCAAATTAACTAATGAGCAGCAGATCAATTGCTGTCTTTGCAGCGAAGTCTTCCACAACATGAAGCTATTGATGCAACACATGAACATCCACTATCGGAACTTTATTTGCACGATATGCGGCGCTGGATTCGTAAACTCATTTCGCTTGAATAGGCATGAAACTACACACGTTAAAAAGAAATCTAGCTTTCCTTGTCGCCATTGTGGACAGGTTTTCGCTGCAGAGTCCAAGAAAAAGGCTCATGTGAACACAGAACATAAAGGCATAGCTGGTGATAGTGTTTGTCAAATTTGTAAAGCAAGGTTCAAGAATTATTACCAGAAAACAAGGCATATGGTGCAAGTACATAATGCTGAGGGCATTAAATGCGATTTGTGTGAGAAGAAATTCAATTTAAAGTCCAATTTAATGCTTCACATGAGGAGCGTGCATCTAAAAGAGAGGCCGTATGAGTGTTCTGTGTGTAGTATGggattttttataaaacggcACATGTTAGGACATTATATGGCTACGCATACTAACGAAAGAAAGTTTAAGTGTGAAGTGTGTGGTAAGGCGTATGCGACGCAGAATAGTAAAAGGAAACATATGAAGAAGAATCACGGGATATCTAAGAGTATGATGGTGCCTAATATTGGGGTCAATATGGGTGTCGGCtgcaataaagaattaaaaattgAGCCTGAAGTAAGTGAACTACTGAAATTACTCAAAAAGCCGACATCGACAAAGAAAAGTAGCAAAAACGATTGGACTGTAACCATATCCAAGAAACGAAAGAAGGTATTGGACGGATTAGTGGTGATCAAAACTAATTTATTGCTCAAGGAGAAACATCTACATAATATAAGAACTATTCTTCTTAACTCCAATGCAACGCCAATAAGAAGTTACAACGGCATAGGCTACACTTGCTGCTTCTGTTCAGAACAATACCCAATACctaaagatttaaaaaagcaTACGATTGACAAACACGACGATAGTATGAAAGAAAAATTCATGCAAGGCTGTCCCCTATCTGTTTACGTCGTCAAATTAGATATTACTGATCTCAAATGTCTCATTTGCGACCAAAATATTGAAGATCTACAAAAATTTGAGGAACATTTACAAACTGTTCatgataaacaaatatatacagatattaaaaatcatattcTTCCATTCAAATTCGAAGGAGATACCTTTACTTGTGTAGTTTGCTCTAAAACTTTTGAAAGATTCAAACTCATACAGGAACATATGAATATACATTACAGAAACTATACTTGCGAAGTATGTAACGCACCATTTGTGAATAAAAGAACGCTTAATAGTCATATTTCTAGGCATAAGCAAGGCGAATTTAATTGTAGCTATTGTCCAAAAGTATTCGATACGCATAACAAGAAAACGAATCATGAGAAATTCGTGCATACAGGTGATCAACGTAGGAATAAGTGTCCACATTGTCAGAAGAAGTTTCTCAGTTATGCGCATAAAAATGAGCATATGGTGCATGTACATGGAACAGCTCCTATAGTGTTAAAATGCATGGCTTGTGACCAAACGTTTACACGTCGAGATAAGCTCACCCGGCATACGAAAAGAGATCATTTACTTGAAAGAAGGTTTGAGTGCGATTATTGTGACATGAAGTTCTATGGAAAAAAGGATTTGAATACTCATATGGTAAAGCATACAggagaaaaaaaatatagatgtGAAGTGTGCTTAAAGACTTACGGAAGAAAGCATACTTTGAGAGAGCATTTACGTATACACGCGGATGATAGGAGGTTTAACTGCGAACATTGTGGGCAGGCGTTTGTACAGAAATGCAGCTGGAAGAGTCATATGCGGTCTAAGCATGGAGAATTTGTTCAATAA
- Protein Sequence
- MYREKHLPEMKKQWHNLTTLLKCSNVTPFKDRNDAGYVCAYCFKAYPNPDILRSHTHNDHAKEKPSYKAGSGIASFVAFLDIVDLKCTLCEQPMDSLQTLTEHLVSVHEKKYYLSVTDYFQPFKLTNEQQINCCLCSEVFHNMKLLMQHMNIHYRNFICTICGAGFVNSFRLNRHETTHVKKKSSFPCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMVQVHNAEGIKCDLCEKKFNLKSNLMLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKFKCEVCGKAYATQNSKRKHMKKNHGISKSMMVPNIGVNMGVGCNKELKIEPEVSELLKLLKKPTSTKKSSKNDWTVTISKKRKKVLDGLVVIKTNLLLKEKHLHNIRTILLNSNATPIRSYNGIGYTCCFCSEQYPIPKDLKKHTIDKHDDSMKEKFMQGCPLSVYVVKLDITDLKCLICDQNIEDLQKFEEHLQTVHDKQIYTDIKNHILPFKFEGDTFTCVVCSKTFERFKLIQEHMNIHYRNYTCEVCNAPFVNKRTLNSHISRHKQGEFNCSYCPKVFDTHNKKTNHEKFVHTGDQRRNKCPHCQKKFLSYAHKNEHMVHVHGTAPIVLKCMACDQTFTRRDKLTRHTKRDHLLERRFECDYCDMKFYGKKDLNTHMVKHTGEKKYRCEVCLKTYGRKHTLREHLRIHADDRRFNCEHCGQAFVQKCSWKSHMRSKHGEFVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909086;
- 90% Identity
- -
- 80% Identity
- -