Lqua019584.1
Basic Information
- Insect
- Lithosia quadra
- Gene Symbol
- -
- Assembly
- GCA_963576445.1
- Location
- OY754897.1:1035869-1039789[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.031 2.1 9.5 0.4 1 23 28 51 28 51 0.91 2 19 1.6 1e+02 4.1 0.4 2 23 77 99 76 99 0.92 3 19 0.017 1.1 10.3 2.6 3 23 124 144 122 144 0.96 4 19 0.00031 0.021 15.8 0.3 1 23 148 170 148 170 0.97 5 19 0.0028 0.18 12.8 0.5 1 23 177 200 177 200 0.97 6 19 0.0015 0.1 13.6 1.3 2 23 208 230 207 230 0.95 7 19 6.7e-06 0.00045 21.0 0.8 2 23 236 258 235 258 0.97 8 19 1.2 83 4.4 1.0 1 23 264 287 264 287 0.89 9 19 0.029 1.9 9.6 0.1 1 14 293 306 293 308 0.90 10 19 0.27 18 6.5 1.7 1 23 398 421 398 421 0.93 11 19 8 5.3e+02 1.9 4.0 2 23 448 470 447 470 0.96 12 19 0.006 0.4 11.7 0.4 1 23 492 514 492 514 0.98 13 19 5.3e-05 0.0035 18.2 0.8 1 23 518 540 518 540 0.98 14 19 0.049 3.3 8.8 3.9 1 23 545 568 545 568 0.92 15 19 2.2 1.5e+02 3.7 0.2 3 20 577 594 576 598 0.77 16 19 1.8e-06 0.00012 22.8 1.9 2 23 606 628 605 628 0.95 17 19 0.00018 0.012 16.5 2.5 1 23 634 656 634 656 0.98 18 19 2.6e-05 0.0017 19.2 1.5 1 23 662 684 662 684 0.99 19 19 3.6e-05 0.0024 18.7 5.3 1 23 690 713 690 713 0.98
Sequence Information
- Coding Sequence
- ATGAAGAAACAGTGGCACAATCTGACCACACTGCTAAAGTGCTCGAATGTCACTCCCTTCAAGGACAGGAACGACGCTGGGTATATATGCGCTTACTGCTTCAAAACATACCCTAACCCAGACATTCTTAGAGCTCACACTCACGGCGATCACGCTAAAGAAAGACCTTCGTACAAAGCAGGTTCTGGAATGGCCAGTTTTGTCGCCTTTCTAGATATAGTCGACTTAAAATGCACACTTTGCGACCATCCAATGGAGTCCCTACAAACTTTAACGGAACATCTAGTATCTGTCCACGAAAAGAAATACTACCTCGGAGTAACAGATTATTTTCAACCGTTTAAATTAACTAACGAACAACAAATTAATTGTTGtctttgcgatgaaattttcCATAACATGAAGCTCTTAATGCAGCATATGAATATCCATTACAGAAACTTTATCTGCACTATATGTGGAGCTGGATTCGTGAATTCATTCCGTTTGAACAGACACGAAACTACCCACGGAAAGAAAAAATCCAGTTACCCTTGTCGGCATTGTGGCCAGGTTTTTGCTGCAGAGTCCAAAAAGAAGGCTCATGTTAATACAGAACATAAAGGCATTGCTGGGGATAGTGTATGTCAAATATGTAAAGCGCGATTCAAGAATTACTATCAAAAAACACGGCATATGATGCAGGTCCATAATGCAGAAGGCATTAAATGCGATTTGTGTGAGAAAAAGTTCAATTTAAAGTCAAATCTGATGCTCCATATGCGAAGTGTCCATTTAAAAGAACGTCCTTACGAATGCTCAGTCTGTAGTATGGGATTTTTTATCAAGAGACACATGTTGGGGCATTATATGGCCACGCATACTAATGAGAGGAAGTTTAAGTGTGAGGTGTGCGGGAAAGCGTATGCGACACAAAATAGTGTCGGCTGCAAAACAGACATAAAAATAGAGCCGGAAGTAAGTAAACTACTGAATTTACTCAAAAAGCCGACATCGGTTACAAAGAAAGATAACAAACACGATTGGAGTGTTACCATATCAAAGAAACTCCGTAAAGCTAAGGTACTGGATGGATTGGTGGCGATTGAAACGAAATTCATTCGCAAGGAGATTACTAAACATTTACACAATATAAGGACCATTCTTCTAAATTCCAATGCAACTCCAATAAAAACTTACAACGGTATAGGATACACATGCTGTTTTTGCTCTGAGCAATATCCTATACCTAACGATCTAAAGAAACATACCTTAGACAATCACGATAAAACTACTACAGAAAAATTCATGCAAGGATGTCCTTTATCCATATACGTCGTGAAGTTAGACATCACAGATTTAAGCTGTAAAATTTGCTGTCATAAATTTGAAGATTTACAGAAATATCTTGATCATTTACAGACTGATCATGACAAAACAATATATACAGATATAAATAATCATATACTACCATTCAAATTTGAAGGAGAAGGCTTCACATGCGTGGTTTGTGCCAAAAACTTCGAAAGATTCAAGTTAATACAGGAACATATGAATGTTCACTACAGGAATTATACTTGCGAAGTCTGTAATTCCCCATTTGTTAACAACAGGACTCTTAAAAGCCACATGTCGAGGCATAAGCAAGGCGACTTCAATTGCAGTTTCTGTCCAAAAGTTTTTGACACCCACAGCAAAAAAACAAACCACGAGAAATTTGTCCACACAGGGGATCAGCGGAGAAACATCTGTCCTTATTGCAAGGAGAAATTTCTAAGCTATGCGAAGAAAAATGAACATATGGTAGAAGCCCATGGAGTAGAGCCTCTTGTGTTAAATTGCAAAGCTTGTGATAAAACTTTTACGAGACGAGACAAACTGACAAGGCATATTAGACGAGACCACTTACTTGAGAGACGGTTTGAATGTGACCATTGTGATATGAAGTTTTATGGCAGAAAAGATCTTAATACACACATGGTGAAGCATACAGGAGTGAAGCAGTACCGGTGTGAGGTGTGTCTGAAGGCGTTTGGGAGGAATCATACGTTGAAGGAACATCTACGTATCCACGCGAACGATAGAAGGTTCAAATGCGAACATTGTGGGCAAGCGTTTGTGCAAAAGTGTAGTTGGAAGAGTCATATGCGTTCAAAGCATGGAGAGTTTGTGTAA
- Protein Sequence
- MKKQWHNLTTLLKCSNVTPFKDRNDAGYICAYCFKTYPNPDILRAHTHGDHAKERPSYKAGSGMASFVAFLDIVDLKCTLCDHPMESLQTLTEHLVSVHEKKYYLGVTDYFQPFKLTNEQQINCCLCDEIFHNMKLLMQHMNIHYRNFICTICGAGFVNSFRLNRHETTHGKKKSSYPCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNAEGIKCDLCEKKFNLKSNLMLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKFKCEVCGKAYATQNSVGCKTDIKIEPEVSKLLNLLKKPTSVTKKDNKHDWSVTISKKLRKAKVLDGLVAIETKFIRKEITKHLHNIRTILLNSNATPIKTYNGIGYTCCFCSEQYPIPNDLKKHTLDNHDKTTTEKFMQGCPLSIYVVKLDITDLSCKICCHKFEDLQKYLDHLQTDHDKTIYTDINNHILPFKFEGEGFTCVVCAKNFERFKLIQEHMNVHYRNYTCEVCNSPFVNNRTLKSHMSRHKQGDFNCSFCPKVFDTHSKKTNHEKFVHTGDQRRNICPYCKEKFLSYAKKNEHMVEAHGVEPLVLNCKACDKTFTRRDKLTRHIRRDHLLERRFECDHCDMKFYGRKDLNTHMVKHTGVKQYRCEVCLKAFGRNHTLKEHLRIHANDRRFKCEHCGQAFVQKCSWKSHMRSKHGEFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00157421; iTF_01152403;
- 90% Identity
- iTF_00157421;
- 80% Identity
- -