Pful033511.1
Basic Information
- Insect
- Parascotia fuliginaria
- Gene Symbol
- -
- Assembly
- GCA_963082885.1
- Location
- OY720201.1:5852299-5854599[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.1e-06 0.00044 21.6 4.2 1 23 8 31 8 31 0.95 2 20 0.00027 0.029 15.8 0.2 3 23 38 59 36 59 0.95 3 20 1.1e-05 0.0012 20.2 0.3 2 23 68 90 68 90 0.97 4 20 4.1e-05 0.0044 18.4 3.0 2 23 99 121 98 121 0.94 5 20 0.00023 0.025 16.0 3.2 2 23 129 151 129 151 0.97 6 20 6.3e-05 0.0068 17.8 2.4 2 23 160 182 159 182 0.95 7 20 9.7e-08 1e-05 26.7 1.3 1 23 188 211 188 211 0.98 8 20 0.00019 0.02 16.3 0.1 1 23 219 242 219 242 0.95 9 20 0.00087 0.093 14.2 2.6 2 23 250 272 250 272 0.96 10 20 6.3e-05 0.0068 17.8 0.3 1 23 298 321 298 321 0.96 11 20 2.5 2.7e+02 3.3 0.3 3 21 330 348 328 349 0.90 12 20 0.042 4.5 8.9 2.3 2 23 358 380 358 380 0.92 13 20 0.00097 0.1 14.1 5.5 1 23 400 423 400 423 0.97 14 20 0.00021 0.023 16.2 0.3 2 23 430 452 429 452 0.95 15 20 3.6e-05 0.0039 18.6 2.1 2 23 459 481 458 481 0.94 16 20 0.00027 0.03 15.8 2.2 1 23 487 510 487 510 0.98 17 20 0.26 28 6.4 4.7 2 23 518 540 518 540 0.95 18 20 1.3e-05 0.0014 20.0 1.0 1 23 547 570 547 570 0.98 19 20 0.064 6.9 8.4 2.5 1 23 577 600 577 600 0.89 20 20 0.0054 0.59 11.7 2.5 5 23 617 636 614 636 0.91
Sequence Information
- Coding Sequence
- ATGTATCACAATCAGCTAGATTTTGTATGTGATTACTGCTCCAGAACatttacaagaaaatataacCTACAAACACATATAGAAAACTGCCATATTAATTCTACAAGTCACTGCGACATCTGCGGTCAGAGCTTTGGCAGTCCTGCCGGTCTTCAACTCCATCTATCGAGAGGACATAATAATTATGGACAACCATTTCCAGAATGTGATGTTTGTGGACGTATCTTTACTCGAAAGCAAAACATAACGTCACATATGATTACAGTACATCTACAAGGCTTAGGTGATGACATACGTTGCAGATTatgcaataaaacatttactacTTTAAGGAATTTGAAGCGACATAAAAATCAGTTACATAACCCGAATGTGGAATACCCTACGTGTCATTACTGTAATAAATTGTTCAAAGGAAAACATTCTTTAATCGCACATATACAATCAGTACATAATACTAATGAAAAAGATGCAATTAAATGTCATCTATGTGAAAAAGTTTATACAAATACTAGAAACTTGAAAAGACATGTTGAGATGTTTCACGGAGAAAGAGGGGAATACAAATGTGATATTTGCCCTAAAGTTTATACTTCTAATCAGAGTTTACGACGGCATTTACGAACAACACATAGTAGTGAAAATCAAGAGCAGTATCAGTGTGAGTTTTGTCCAAAGGTTATTACAGGAAGTGACAATTTAGAGGCCCATATTCAGTTCAATCATACAgaaataaaagtagaaaatgTTTGCGAGGTATGTCAACAGAGTTTTGAAGAAGAACATCATTTAAGACAACATATAAAAAAGGATCATTCATTTGCCGCTTTCTATAATTATTGCAAAAAGGTTTTAGTGAAGCAGTATGGCACGGaatatataactaatatatataattgtgAGTATTGCACATATTCTTATCCAAATGTGTACGAATTAAAAGATCATATGAGAGGGGCCCATGATGCAGAATACCTACTATCAAATTGCAATGTATGCTTTAATAAATTCTATAGCAAAGAAACTATAGTTGCTCATAAACAAATATGTCTGCCACCGCTGAATGTTAATAGATGTAGTCACTGTGATAAGTTATTTACTGATATTTCAAGTCTGGAGTTCCATTCTAGAATTTTCCACCCGCAAGCTCAAATCGCCGATTCTAATATTACTTCAACAAACTTAGAAGAGGATTCATTTAAATGTGAACACTGTGACCGAGTTTATTACAGTGACAGGTCTTTAAAACATCATATTAAGTTAAAACATACTACAGATGAAGAAGTAGAATGTGAAGCGTGTGGAAAAATATGCAgcaataagtattatttagcGTCTCATATAAAAATTGTACATAACACTGATACTTGGTCCCGCTGTGAATACTGTGATAAACAGTTTAAATCTAAACGTAATATTAGACGACATATAGAGTACACACATTTAGGAATGCAACGATATAAGTGTGTAGAATGTGAGACATTATTTAAGGAGAAACGGAGTCTCAGGAAACATGTTAGGACAAAACATCCTAATTCTGCAGCATTTCCACAATGTCACATATGTTATAAGCGATTTGAATCTGCAAGATCTTGTAAAATACatctaaaattattacattcgTTCAACATGAATACATATCCATGCCATCTCTGTTCCATGTCATTTAGCTCGAATGAAgctttaaatattcatttaaatactAAACATTTAGCCGAAGATCAAATATATAAGTGTGAGACTTGTAACTTAGTTTTTAAAGGGCAGGATAAATTCGACAGTCATAATGATGTTTGCCATCTTAATCTATTACCAAAAGTGCAAGAAAAAGTATTACCCCGATGTATACTGTGTGTAAAAGATTTTAGTACACGAAAAACTTTAAAAAGACATATTAAAAAGTTTCATATAGAGTTCGAAGTTGATGATTTAGCGACGTTTGGCTCAAGAAGGCGCAGTTTTACTGTGGATTGTGAAgaatgtattaaaaattttaatgatgattttcattataatatttatcagaagatgaaacatttaaaagaaggtattatttttaaatgtgagGTCTGCCAATCTTCATACAACTGTTTAGAGTATGCGATACAAAGATATAAAGTTACTAATGCAGATGTCACTAAAACTAAAATGATTCTTAGTGAGTTATGCACTACGGAGATGAGCGAGGATGAGAATGGTTATAGCGAAGAGTTACCTGAAAGTACTACAGATGAGATAAAATTAGAGgatgattttattattcatgaaaatgatattaaaatggAACCATCATCACCTTAA
- Protein Sequence
- MYHNQLDFVCDYCSRTFTRKYNLQTHIENCHINSTSHCDICGQSFGSPAGLQLHLSRGHNNYGQPFPECDVCGRIFTRKQNITSHMITVHLQGLGDDIRCRLCNKTFTTLRNLKRHKNQLHNPNVEYPTCHYCNKLFKGKHSLIAHIQSVHNTNEKDAIKCHLCEKVYTNTRNLKRHVEMFHGERGEYKCDICPKVYTSNQSLRRHLRTTHSSENQEQYQCEFCPKVITGSDNLEAHIQFNHTEIKVENVCEVCQQSFEEEHHLRQHIKKDHSFAAFYNYCKKVLVKQYGTEYITNIYNCEYCTYSYPNVYELKDHMRGAHDAEYLLSNCNVCFNKFYSKETIVAHKQICLPPLNVNRCSHCDKLFTDISSLEFHSRIFHPQAQIADSNITSTNLEEDSFKCEHCDRVYYSDRSLKHHIKLKHTTDEEVECEACGKICSNKYYLASHIKIVHNTDTWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCVECETLFKEKRSLRKHVRTKHPNSAAFPQCHICYKRFESARSCKIHLKLLHSFNMNTYPCHLCSMSFSSNEALNIHLNTKHLAEDQIYKCETCNLVFKGQDKFDSHNDVCHLNLLPKVQEKVLPRCILCVKDFSTRKTLKRHIKKFHIEFEVDDLATFGSRRRSFTVDCEECIKNFNDDFHYNIYQKMKHLKEGIIFKCEVCQSSYNCLEYAIQRYKVTNADVTKTKMILSELCTTEMSEDENGYSEELPESTTDEIKLEDDFIIHENDIKMEPSSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00677880;
- 90% Identity
- -
- 80% Identity
- -