Basic Information

Insect: Pararge aegeria
Gene Symbol: -
Assembly: GCA_905163445.1
Location: NC:1616561-1627263[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.8 8.1e+03 -3.4 0.0 37 44 124 131 122 132 0.84

2 10 0.2 8.9e+02 -0.3 0.1 23 45 419 441 411 449 0.76

3 10 0.045 2e+02 1.8 0.1 18 47 442 470 431 475 0.85

4 10 2.2e-05 0.099 12.4 0.1 20 51 500 531 494 534 0.83

5 10 4e-05 0.18 11.6 0.0 21 45 557 581 549 588 0.85

6 10 0.51 2.3e+03 -1.6 0.0 26 43 590 607 582 612 0.85

7 10 9.9e-05 0.44 10.3 0.0 21 45 613 637 606 643 0.91

8 10 0.72 3.2e+03 -2.1 0.0 22 45 642 665 637 672 0.84

9 10 0.01 46 3.8 0.0 21 45 721 745 716 751 0.88

10 10 9.5e-06 0.042 13.6 0.1 20 52 776 808 768 810 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.8	8.1e+03	-3.4	0.0	37	44	124	131	122	132	0.84
2	10	0.2	8.9e+02	-0.3	0.1	23	45	419	441	411	449	0.76
3	10	0.045	2e+02	1.8	0.1	18	47	442	470	431	475	0.85
4	10	2.2e-05	0.099	12.4	0.1	20	51	500	531	494	534	0.83
5	10	4e-05	0.18	11.6	0.0	21	45	557	581	549	588	0.85
6	10	0.51	2.3e+03	-1.6	0.0	26	43	590	607	582	612	0.85
7	10	9.9e-05	0.44	10.3	0.0	21	45	613	637	606	643	0.91
8	10	0.72	3.2e+03	-2.1	0.0	22	45	642	665	637	672	0.84
9	10	0.01	46	3.8	0.0	21	45	721	745	716	751	0.88
10	10	9.5e-06	0.042	13.6	0.1	20	52	776	808	768	810	0.84

Sequence Information

Coding Sequence: ATGAGAGAAGACAATAAAATGCAGTGTTGTGTTCCTTTCTGTGGAAATACTTCCTTCAATAGCACGGGCAAGGACAATGCGATTTCTTTTCATAGGTTACCCAGTGAAGTAAATCGCTGTGCTACATGGATAAAAGCCCTAGGCTTGACAGACCAGCTGCTCAAGTCTACGGTTGTCTGCTCGCAGCATTTTCTAGATGACGACATTTGTGAAACAGGGAATGGCTTAAGACAAATTGCCACTGATGCTATCCCTTCTACTGTGCAGGTTTGCATGATATGcctacacacagacagaaagGTTATGCTAATGAGTAAACTTAAATTGGAAGAAGCATATGAAAAGTTAACCGGATATCTTTTGGGTGGTAGTAGAAACCTGAGACAGACACTCTGCGAACAATGTGCAGAGGGCCTGCTGAACTGCAATAAATTCAGAGAAAAGACTTTGAGAGCCCGTACACTGATGATGGActtagtagaaaaatataaatttATAACAATACAACATATACAAATGTTAAACCACACTGAAAACGAAATAATGTCAACAATACGTGACAACGGTGACTATGAAGTCCAAAGCGAACGCGCAAAATTAGAGGAAACGGGACGGGCCGTTGTTGAAATTGAGATAGTGAAAAATGAACCGTGTTATGACTTCATGTCAAATGATGAAGACTCAGATAGTCACAAACACGAAGGAAATGTTGTCATTAAAGAAGAATACTTATCCGATGATAGCATGCTGTTGGAAGAAAGACAACGTGATGATGAAACATGCAACAAAATAAACCAGAAACCAGCTCCCTTTGCGTATGAGGTACAAGTGTTGGAAGCGCAGGTCCCGTTGAAGAAAGAATTAAATATCTTCAGTTGTACGCTTTGTGATGCAGAGTTAATAAGTGATTTGGCGTACAACGAGCATATGAGCATGCATTTACAGGATAGCGATGGTGATAATGATACCTCACAGCTATGCGAGCCTGGTAAACCTGCCGCATCAAGCTGTTCTACACAGCTACGCATAGTTGATAGCAAGCAAGCCGTACATAGGATAAATCAACCACAACCTGCCGCATCATTAGGCCACACTttggTCCCACACTTTGAACTGCCCTCCAGTGAACATAACGATGCTAAAGAGGAAACTGTTGAAATCCAAATAGACGGAAACGTTTCTCTTCCCAAATCATTTGGACGTGAATTAGCACCGAGTAGTGATTTGAGACAGGACAATCAAACTACAGAAGGACAGTTATTCACTTGTGCGTTCTGCAACAACACTTTTGCGCACAAGTGTTCGCTCATGAGGCACATGAGAAGGCACACTGGTGAGAAACCATTTTCTTGTGCGTTGTGCGACGACAAATTTGCGGAACATGGTGCCTATAAAAGACACATGGAGCGTCACGCCGGCGGGAAAACTCTCAGTTGTAATTTATGCGATGCCAAATTTTCGCTAACTAGCTCTCTCATAACACATCAAAGAAGTCACAACCGCGAGAAACCGTTTTCTTGTACATTGTGTGATGCGAAATTCACACAGAGTTCTGCTTTTAAACGACACGTTGAAACCCATACCGGTGAAAAGCCACTTAGTTGTGATCTGTGCGATGCCAAATTTTCGCATAACAGCTCCCTCATATCACATTCAAGGACGCACACACGCGAGAAACCGTTCTCCTGTACATTGTGTGACGCAAAGTTCACACAAAGCGGTGCACTCAAAAGACATATTGATACTCACACTGGTAGGAAATCTCTAAGATGTGATATATGCGATGTTAAATTTTCTCAAAATAGCTCTCTCATAAGACATCAGCTAACTCACACCGGCGAGAAGCCGTTCTCTTGTACATTGTGTGACGCAAAATTCACACAAAGCGGTGCACTCAAGAGACACGTAGATGCTCACACTGGTGAAAAGTCCTTCAGTTGTAAGCAGTGCGGATCGAAGTTTACCCAAAACAGTTCGCTCGTGAGACATATGAAAACTCACACAAATGAAAAACGTTTTAATTGCAATTTATGTGACGTGAACTTTGCATTCCGCAGCGCACTCAGAAAACATATGAGAACCCATGGGCGTGTTTGCGAAGTGTGCAATCAGGGTTTCTCAAACAAAATGAACTTAGTGATACACATGAGAACTCACGCTGTCGAGGAGCCATTTTCTTGTAATTTATGTGACGCCAGATTTACACAAAACAGTACTCTCGCGGAGCATCTGAAGGCACATATTGCTggaaaacaatattattgtgAATTATGCAATTACGAATTCGCGAATAAGCGAAGCTTGACGATTCATAACAGGTCTCACACAGGCGAGAAGCCATTTTCTTGTAACGTATGTGACGCCAAATTCACTCAAAATTGTAATCTAGCGAGGCACATGAGGATCCATACTGGTGAAAAGCCTAATATGAGCTGTACCAGCTAA
Protein Sequence: MREDNKMQCCVPFCGNTSFNSTGKDNAISFHRLPSEVNRCATWIKALGLTDQLLKSTVVCSQHFLDDDICETGNGLRQIATDAIPSTVQVCMICLHTDRKVMLMSKLKLEEAYEKLTGYLLGGSRNLRQTLCEQCAEGLLNCNKFREKTLRARTLMMDLVEKYKFITIQHIQMLNHTENEIMSTIRDNGDYEVQSERAKLEETGRAVVEIEIVKNEPCYDFMSNDEDSDSHKHEGNVVIKEEYLSDDSMLLEERQRDDETCNKINQKPAPFAYEVQVLEAQVPLKKELNIFSCTLCDAELISDLAYNEHMSMHLQDSDGDNDTSQLCEPGKPAASSCSTQLRIVDSKQAVHRINQPQPAASLGHTLVPHFELPSSEHNDAKEETVEIQIDGNVSLPKSFGRELAPSSDLRQDNQTTEGQLFTCAFCNNTFAHKCSLMRHMRRHTGEKPFSCALCDDKFAEHGAYKRHMERHAGGKTLSCNLCDAKFSLTSSLITHQRSHNREKPFSCTLCDAKFTQSSAFKRHVETHTGEKPLSCDLCDAKFSHNSSLISHSRTHTREKPFSCTLCDAKFTQSGALKRHIDTHTGRKSLRCDICDVKFSQNSSLIRHQLTHTGEKPFSCTLCDAKFTQSGALKRHVDAHTGEKSFSCKQCGSKFTQNSSLVRHMKTHTNEKRFNCNLCDVNFAFRSALRKHMRTHGRVCEVCNQGFSNKMNLVIHMRTHAVEEPFSCNLCDARFTQNSTLAEHLKAHIAGKQYYCELCNYEFANKRSLTIHNRSHTGEKPFSCNVCDAKFTQNCNLARHMRIHTGEKPNMSCTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01151268;
90% Identity: iTF_01151268;
80% Identity: iTF_01151268;