Paeg013118.1
Basic Information
- Insect
- Pararge aegeria
- Gene Symbol
- -
- Assembly
- GCA_905163445.1
- Location
- NC:8128348-8135549[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00022 0.0089 16.0 4.0 1 23 270 292 270 292 0.98 2 12 0.035 1.4 9.1 1.1 5 17 397 409 394 415 0.88 3 12 0.0028 0.11 12.5 1.6 2 23 426 448 424 448 0.89 4 12 0.0003 0.012 15.6 1.3 1 23 452 474 452 474 0.98 5 12 0.00046 0.019 15.0 0.6 2 23 496 518 495 518 0.93 6 12 0.16 6.5 7.0 0.6 1 23 522 545 522 545 0.91 7 12 0.062 2.5 8.3 0.6 2 23 568 590 567 590 0.93 8 12 1.6e-05 0.00066 19.6 2.4 1 23 600 622 600 623 0.96 9 12 0.0067 0.27 11.3 1.4 3 23 640 660 639 660 0.97 10 12 0.00033 0.013 15.5 0.7 1 23 666 688 666 688 0.96 11 12 0.79 32 4.8 3.6 1 22 694 715 694 718 0.90 12 12 7.1 2.9e+02 1.8 0.0 3 23 787 807 785 807 0.88
Sequence Information
- Coding Sequence
- ATGGAATCACAGAATTTATGGGAGACAAATGTTGCTGGTGACACAATGATAAAGGAGGAAATAACCAATATAACAGTGGACTTTGAACCTACTTATGAAGATGATAGTATTTCAAACCCAGAAGAAAATTTAATGGATGATCTAGTTAATGTTAAGGAGGAGTTTATAATGCCAAACTATGAATCTGATCatgaaaatacagaaaaatctAACATAGATATTACAGAGGCTGTGTCTAATAAACTAGTGTTGCATCTTGAAAGTATTGCAGgtACAAGTGACTTCTCAAGAAATGCAGATGTTAAAATGGAACGTTTTGATAATATCACTGAAGAATATCCTAATATTGATGATGGATCCATGGACAGTGATGAAGCAAGGGCGTTGAACAACGTTGAAGCTTGTTTACAAGATGAGATAGATATTAAGCATGAACAGAATGagGTAAACCCAAAAGAAGTTCTaagaagatttattaaaaaagaaagagaTTTAAATGTCACTGAAACTAATCTAATATCAAACAAGGTAATCAATACAACTTCTACTATAACCAATCCTCAAGCAGGTATAATCCAATCTGAAACAACTAAGACTTTAGTAATGGAAATACATCCAATGGTACAAGGTCTTAAAATACCATTAATGCGAAATCCAGAAGAAATTTTACCAACAAATTATTCTTCAGAAAACATGTTGTACGAAGAATCTTTCCAGCTGAATTCTATAACTGGTAACGTATTATCTCTCGAACAAGAGGCTTACGGATTATTGAAGGAAGGTCATTGTGATGTTAAAGGCAAAAGACACCAATGCCAAAAGTGTgaaaaaaactattcaaaattaaGAAGTTTAAGAGAACATATGAAAGTACATGAGACTATAGAGAGAAGGGCTATGGGTGTTCTTAAAGGTTTACAGACAAAGAAAGCGAACTTAGAGAAACGGTTATATGGCGTACAGAAAAAAGTGAAAAAGATCGATGTACATGCTTTAAAGAAAAAAGTGGAGAGATCGGAAAGGGCAGAAAAACGTACCAAGGTAAAGGCAGAGAAAAAACCCAATTTGAAAAAGGAAAGGAAAGAGAAATTAGcaactctaaaaaaagaaactgaagagaaaataaataatctaaagaAGGagttagaagagcaacctagtGATGTACAAATAGATGGACATAAATGTATATGTGGGAAAGTTTTTAAAAGGAAAAGTAGTTTATTAGCGTGTTTAAGGTCTCATGAGGTATCTACAGATGCGAACTCTTGTTTTCCATGCATTTCATGCACTAAACAATTCAAAGATAAAGAAGAGCTGGCAGCACATCGAAGACGTTTACACAGAAAACGGTTCCCTTGCAAATTCTGTCCAACTGACTATAACACGCGTAAAGATCTATTTAAACATCTTCAAATACATCAAAAAGTTCAATTAATGGAGTACAAAGTGATATCTGAATATGTTAAAGGGAAGCAGAAGTTGAAATGTTTTATGTGCTCGAAAAGTTTCTCGGAGCTGTCTGAACTAAAATATCACGTTATGGAAGATCACCAGGAACCTTACATCTGTCCACATTGCAATGGAACTTTCGCGAAAATAATAGATTTCGGGAATCACACAAAAGCGTTTCACCCAGAAGTAGAGGGCGAGTCTGTTTTGGACGTCCTTGAAGCATTTTCAAAGTTAGTGCAAGCTTGGAAATGCGAGGATTGCAATGAACAGTTTCACGAAGCCGACAAATTTGCTATGCACCAAATAGAGAAACACAGTCCCGACGTCAAAGACAAAGATCAATTTCAGTGTGAAGACTGCCGACGAGTTTTCATCAGTCAAAAAGGTTTAACATCTCATAAACGAATACACCACAACACAGAAATCAAGGAAGAAGCCGAACCTGTAGAAGAGGGAGCAATGTGTGTTGAATGTCGGAAGATATGTAAAGACATTAATGCTTTAAATTCTCACATGCGTCTCCATTCCCTGGAGAGGAAATACCCGTGCAAATTCTGCGATTTTCGTTTTGCTACTCCGGAAAAACTTAAAACTCACTCCGAAATTCATACGGGCGATATGAAATATGTGTGCTTTATTTGCGAATATCAGTGCAGTTCAGAAAATAGGCTAGAACACCACAAGATGTCTATAAAGCATGCAAATATGAAGGAGTTCTTGTTGACTGGAAAGCATCTGATCGAGGAAGCAAGTCCATCTAAGAAAAGAGAATCCAAGCAAGAAGAGAGAGAGGTTAAGAAAAGAAAGGAACATAAAGACAAGAAAAAGGAGCACAAAGATAAGAAAAAGGAGCATAAAGAAGATAAAGACGAGGCGAGTTGTTCTAAAGAAGAGACAGTTATATGTGATGTGTGCGGAGATATGTTCGCGAGTGAAAAGATAATGTTTGCACACAAAGCAACACATCCTTTTATAGAATTCCCTAATGAAGACACGCCTACTAGAATATTCTTTAAGTGA
- Protein Sequence
- MESQNLWETNVAGDTMIKEEITNITVDFEPTYEDDSISNPEENLMDDLVNVKEEFIMPNYESDHENTEKSNIDITEAVSNKLVLHLESIAGTSDFSRNADVKMERFDNITEEYPNIDDGSMDSDEARALNNVEACLQDEIDIKHEQNEVNPKEVLRRFIKKERDLNVTETNLISNKVINTTSTITNPQAGIIQSETTKTLVMEIHPMVQGLKIPLMRNPEEILPTNYSSENMLYEESFQLNSITGNVLSLEQEAYGLLKEGHCDVKGKRHQCQKCEKNYSKLRSLREHMKVHETIERRAMGVLKGLQTKKANLEKRLYGVQKKVKKIDVHALKKKVERSERAEKRTKVKAEKKPNLKKERKEKLATLKKETEEKINNLKKELEEQPSDVQIDGHKCICGKVFKRKSSLLACLRSHEVSTDANSCFPCISCTKQFKDKEELAAHRRRLHRKRFPCKFCPTDYNTRKDLFKHLQIHQKVQLMEYKVISEYVKGKQKLKCFMCSKSFSELSELKYHVMEDHQEPYICPHCNGTFAKIIDFGNHTKAFHPEVEGESVLDVLEAFSKLVQAWKCEDCNEQFHEADKFAMHQIEKHSPDVKDKDQFQCEDCRRVFISQKGLTSHKRIHHNTEIKEEAEPVEEGAMCVECRKICKDINALNSHMRLHSLERKYPCKFCDFRFATPEKLKTHSEIHTGDMKYVCFICEYQCSSENRLEHHKMSIKHANMKEFLLTGKHLIEEASPSKKRESKQEEREVKKRKEHKDKKKEHKDKKKEHKEDKDEASCSKEETVICDVCGDMFASEKIMFAHKATHPFIEFPNEDTPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00205479;
- 90% Identity
- -
- 80% Identity
- -