Pmar010404.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- -
- Assembly
- GCA_900065295.1
- Location
- FIZT01042913.1:10748-13162[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.1e-05 0.0033 18.0 0.2 2 23 43 65 42 65 0.96 2 17 0.14 11 7.0 13.9 1 23 138 160 138 161 0.95 3 17 3.9e-05 0.0031 18.1 0.9 2 23 178 199 177 199 0.96 4 17 0.00048 0.038 14.7 0.4 1 23 221 244 221 244 0.94 5 17 6.2 4.9e+02 1.7 0.8 2 17 264 279 263 280 0.84 6 17 1.4 1.1e+02 3.8 3.2 1 23 303 326 303 326 0.89 7 17 0.0022 0.18 12.6 0.2 2 21 345 364 344 365 0.92 8 17 0.0011 0.089 13.5 8.1 1 23 377 400 377 400 0.96 9 17 2.7 2.1e+02 2.9 0.0 2 23 421 443 420 443 0.92 10 17 0.00025 0.02 15.5 0.7 1 23 451 474 451 474 0.94 11 17 1 80 4.2 2.1 1 23 500 522 500 522 0.95 12 17 3e-05 0.0024 18.5 1.9 1 23 528 551 528 551 0.97 13 17 0.0075 0.6 10.9 5.2 1 23 557 579 557 579 0.98 14 17 0.00059 0.047 14.4 0.7 1 23 585 607 585 607 0.96 15 17 1.2e-05 0.00092 19.8 2.8 1 23 613 635 613 635 0.98 16 17 0.00028 0.022 15.4 2.9 1 23 641 664 641 664 0.97 17 17 0.00058 0.046 14.4 4.0 1 23 670 692 670 692 0.98
Sequence Information
- Coding Sequence
- ATggtgaaaagcaaaaaaatacgatgtCTGGCTACGGAGTCGCCCTCGGCACGAGCATCCTCTGCAGCCTCAAAATCTTCACCTTCGTGTGAAAAAACTCGTACCGtcggtaaaattgaaaaatctaaatgtAACATTTGCGGGGCCGCTTTTACCCATTTGGACGATTTAGCCTGGCACAGAGATACGATTCATGACGCATCCAGTGCTACGAGCGTAATTCGTAAAAGTTCTCGGATCGAAGCTAGAGCCTCGAGTAAAACGAAAGGAGCTAGGCGTGTTGAAAcgattgaaattgatttagGTGATGAGAAAACAGAAGAGAATGCCGTTCTAGTAGCGGATGGAGGAGAAACTGCAGAAAATAGCGAAGATACTGCTTGTAAAAAGTCGACCATCGTTGAATCTGTATTTCATTGTCATCATTGCGAacacatttgtaaaaataaatctgcGATGAACAAGCATTTGCGAATTCATCATCCAGACGAATCGataaatggtgaaaaaacaaTCAGACAGGCCATTCTTTCGTGTGCAATCTGCTTGAGAACTTTCGCTCATAAAGCGAATCTCCGGAAACACGTGATTACTCATAACCCTTTGCATAACGGTCCTGGCGTGAAGGTAAACCGAGCCGACCAAAGGTGGAAGAAAGGATACTGTTGCGATATCTGCGACCGTGCATTCAACAACCAAAGAGATATATTGGCTCATCGTGATATAGTACACAGTACAGCGGCGCCTCTCGAGTGGATGCGTTTTTACGAATGTTGCTGCGTAGTGAGCTATTGCGACGCATGCGGccattatttcaaaaagaaagcGTTCCTAAATCACGATTGCAGGAGTGATCCCGAAGAGGTCGCTGAACGGGTACAACAACTGCTCGAGTCGAATCCGTCCTTCGAGTGCGATATTTGTTCGTTGTGCTTTCACTGGAAGTGGATGTACCGGTCGCATCGGGAAAGTGTGCATCCCAACGTATCACCCATCGATTGGGAAACGCTGGCCAAGGCGAATGTATCGATTTATTGTCCATCTTGCTTGAAAGCTTTCGCCGACAAAGATACACTGTCGAAGCACAGATCTACGTgcattgtgaattttgaaaatgaagtgaaaagaTTCGACTGTAGTCTGTGCGATCGATCGTTCTGTCGCAAATTCGATTTCCACAGACATTTAAAGAGTAAACATCCCGATCCGGAGTTGACAGTAGGAGTCGAGAACTCCGCATCGAGGACCAAACCGAACATTCCGTGCCCATTTTGCGATATCGCAATGCCAACTCGTAATGTCGTCTTGAAGCATATCAAAATCGCGCACGGTATCGAAACCGATACGCCATTCGTGTGCGTACTTTGtaataaagttttcaaaagaaaagccACAATGGAAACGCACAACCAGATATACCAtccgaaagaagaaaataccgAAGAAACGGAAAAAATCCTCGAAGAGGCGAAAATTCTGCTGGATGGCGAGACGGCCTACCATTGCAATATCTGCAATCGTAACGTATTGAACTCGACGCGGTTCGTCGCACACTATAGATTGCACAAAATGGAACGAAAATTCACCTGCGATTTGTGCGGTAAACAAACCCGTACCCAGCATCAGCTCAACACTCACGTTAAAATCATCCACCTGGATATTCGCAACTTCGAGTGTGACATTTGCAATAAGAGTTTTCACTCGAAGCAGTCGTGCGAAGAACACAGACGTATTCATACCGGAGAAAGGCCGTACTCGTGCGAAATCTGCGGCAAAACCTTTATCGCCATGAACGCCCTGTTCactcataaaaaattccacaacgATTTCTTCGCTCATTCTTGTTCGCTgtgtccgaaaaaattcaaagttcgCAGATCGCTCATCAATCATATCAGAACGCATACCGGAGAACGTCCTTATAAATGCGATCTGTGCCCTAAAACGTTCAACAACTCGTCCAGATTTTCGTACCATAAAAAAGTCACCCATTCGGATAATCGACCGTTCACGTGCGATCAGTGCGGCAGCTGCTTCAAAGCGAATAAATTCCTAATGAGGCATATGAAACTGCACACCACTCGTACTCATATACAGTTTCGTAGGCGTAATAATCCGGCGTATTTCGAAAAGCACGCAACCAACGCCAAGAAGCCGGTGGCGTGTTTGTCGAAAAAATCGCCCCTGGATACGAATGCGAATACGAAAGCTTCCAATGGTGGCGAATCCGGTGCCACTGAAACTGTTACCACGACACCGGTTTTATACACGGTTCGtacctttcgaaaaattgcgagCAAAGGAGTCGAATTAGAAAACGTGCTGATCAGTAGTGCGGCCACTAGTGATGAGCTGACGTTGGCCGATGATACCGAGCCGCATTTTCTAGCTGATCCGTTGGCCAGTGATGGCTAA
- Protein Sequence
- MVKSKKIRCLATESPSARASSAASKSSPSCEKTRTVGKIEKSKCNICGAAFTHLDDLAWHRDTIHDASSATSVIRKSSRIEARASSKTKGARRVETIEIDLGDEKTEENAVLVADGGETAENSEDTACKKSTIVESVFHCHHCEHICKNKSAMNKHLRIHHPDESINGEKTIRQAILSCAICLRTFAHKANLRKHVITHNPLHNGPGVKVNRADQRWKKGYCCDICDRAFNNQRDILAHRDIVHSTAAPLEWMRFYECCCVVSYCDACGHYFKKKAFLNHDCRSDPEEVAERVQQLLESNPSFECDICSLCFHWKWMYRSHRESVHPNVSPIDWETLAKANVSIYCPSCLKAFADKDTLSKHRSTCIVNFENEVKRFDCSLCDRSFCRKFDFHRHLKSKHPDPELTVGVENSASRTKPNIPCPFCDIAMPTRNVVLKHIKIAHGIETDTPFVCVLCNKVFKRKATMETHNQIYHPKEENTEETEKILEEAKILLDGETAYHCNICNRNVLNSTRFVAHYRLHKMERKFTCDLCGKQTRTQHQLNTHVKIIHLDIRNFECDICNKSFHSKQSCEEHRRIHTGERPYSCEICGKTFIAMNALFTHKKFHNDFFAHSCSLCPKKFKVRRSLINHIRTHTGERPYKCDLCPKTFNNSSRFSYHKKVTHSDNRPFTCDQCGSCFKANKFLMRHMKLHTTRTHIQFRRRNNPAYFEKHATNAKKPVACLSKKSPLDTNANTKASNGGESGATETVTTTPVLYTVRTFRKIASKGVELENVLISSAATSDELTLADDTEPHFLADPLASDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01472641;
- 90% Identity
- -
- 80% Identity
- -