Basic Information

Insect: Paracoccus marginatus
Gene Symbol: -
Assembly: GCA_900065295.1
Location: FIZT01013852.1:4128-6940[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.012 0.93 10.3 9.9 1 23 196 218 196 218 0.98

2 22 6.5e-07 5.2e-05 23.7 1.3 1 23 224 246 224 246 0.99

3 22 6.9e-08 5.5e-06 26.8 4.9 1 23 252 274 252 274 0.98

4 22 5.3e-05 0.0042 17.7 1.5 1 23 280 302 280 302 0.98

5 22 0.0007 0.055 14.2 0.1 2 23 309 330 308 330 0.97

6 22 0.95 75 4.3 1.3 2 23 337 358 336 358 0.94

7 22 0.97 77 4.3 0.2 1 23 362 385 362 385 0.90

8 22 0.076 6 7.8 0.4 1 23 391 413 391 413 0.95

9 22 4.4e-06 0.00035 21.1 1.5 1 23 419 441 419 441 0.98

10 22 3e-08 2.4e-06 27.9 2.0 1 23 447 469 447 469 0.98

11 22 4.4e-07 3.5e-05 24.2 2.3 1 23 475 497 475 497 0.99

12 22 0.0008 0.064 14.0 3.4 1 23 503 526 503 526 0.97

13 22 0.00039 0.031 15.0 0.2 1 23 533 555 533 555 0.98

14 22 0.00024 0.019 15.6 2.1 1 23 561 584 561 585 0.96

15 22 0.016 1.3 9.9 0.1 2 23 592 613 591 613 0.96

16 22 6e-07 4.8e-05 23.8 0.8 1 23 619 641 619 641 0.98

17 22 7.5e-07 6e-05 23.5 2.6 1 23 647 669 647 669 0.98

18 22 2e-05 0.0016 19.0 2.5 1 23 675 697 675 697 0.97

19 22 1.7e-07 1.3e-05 25.6 2.1 1 23 703 725 703 725 0.99

20 22 4.2e-06 0.00033 21.2 3.9 1 23 731 753 731 753 0.98

21 22 0.00012 0.0096 16.6 5.9 1 23 759 781 759 781 0.99

22 22 0.00073 0.058 14.1 1.2 2 23 792 814 791 814 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.012	0.93	10.3	9.9	1	23	196	218	196	218	0.98
2	22	6.5e-07	5.2e-05	23.7	1.3	1	23	224	246	224	246	0.99
3	22	6.9e-08	5.5e-06	26.8	4.9	1	23	252	274	252	274	0.98
4	22	5.3e-05	0.0042	17.7	1.5	1	23	280	302	280	302	0.98
5	22	0.0007	0.055	14.2	0.1	2	23	309	330	308	330	0.97
6	22	0.95	75	4.3	1.3	2	23	337	358	336	358	0.94
7	22	0.97	77	4.3	0.2	1	23	362	385	362	385	0.90
8	22	0.076	6	7.8	0.4	1	23	391	413	391	413	0.95
9	22	4.4e-06	0.00035	21.1	1.5	1	23	419	441	419	441	0.98
10	22	3e-08	2.4e-06	27.9	2.0	1	23	447	469	447	469	0.98
11	22	4.4e-07	3.5e-05	24.2	2.3	1	23	475	497	475	497	0.99
12	22	0.0008	0.064	14.0	3.4	1	23	503	526	503	526	0.97
13	22	0.00039	0.031	15.0	0.2	1	23	533	555	533	555	0.98
14	22	0.00024	0.019	15.6	2.1	1	23	561	584	561	585	0.96
15	22	0.016	1.3	9.9	0.1	2	23	592	613	591	613	0.96
16	22	6e-07	4.8e-05	23.8	0.8	1	23	619	641	619	641	0.98
17	22	7.5e-07	6e-05	23.5	2.6	1	23	647	669	647	669	0.98
18	22	2e-05	0.0016	19.0	2.5	1	23	675	697	675	697	0.97
19	22	1.7e-07	1.3e-05	25.6	2.1	1	23	703	725	703	725	0.99
20	22	4.2e-06	0.00033	21.2	3.9	1	23	731	753	731	753	0.98
21	22	0.00012	0.0096	16.6	5.9	1	23	759	781	759	781	0.99
22	22	0.00073	0.058	14.1	1.2	2	23	792	814	791	814	0.97

Sequence Information

Coding Sequence: ATGGAATGCACCGAGTCAGTGTTTATCGAAGAAGGCGCTTGCGAGACAGTCATCGCCGATGATGTGGTTACCGAAGAAGTCGTTCAAGCCGAGGAACCTCctcaagaagaagaagaagcactCCCATCTgcTAACGAAGAGAACGACCAATGGTATATATATTTGCTTCAAGCAGATCAAGCTCTACATCAGTTACACGGcaccaaagttgaaattgagtTGCCTAAAGAAGAAGTGGAAGTTATCGATGGCACGTACGAATGTGAAATTGAAGATATGACTCAGCTTCAAGAAGGTGTTCCAGTTGAAAACGAAGAACAATTCGCCTACAATATCGACGCGATTCGTCAAATCCAGGAAGCCAAAGTAGAAATTCAACAAGACGGTTTTAATTACACCATCGATGAGGTGAATGGATTCAAACACGAGCCTCCTGAACATATAGAGAACTTCGACCCCAACATATACAATGAATACGCTTCtgagGTTATTATCGGAGACGAAGTGGTAATTGGCAACGAAGTAGTCATCGAAACGGAAAACGACCTTATGACTTACGCCAACGATGGAGTATCGGAGTACCCATTTCATTGTCAACATTGCAATAAATCGTTTCATAAACGAAACAAGCTAGAGCAACACGAACGTATGCACACCGGCGAACGACGTTTCAAGTGTCCGCATTGCGAAAAAGGATTCAACCAAAGAGTTAATCTAGACAACCATATTCGAGTACACACCGGTGAAAAACCATTCACATGCGAATATTGTCATAAAAGCTTCAGCCAACAGGGCAATTTGAAAACACACATGCAGAAACATTTATACGTAGAATATTTCATTTGCCCTCACTGTAAGGATAATTTTCGTTCGAAAGCCGAGCTCAACGAGCACATCAAAACTCACAAAGATAACGTCATACTGGAATGCCCTTTCTGTCAAATGGTTTTCAACAACGAAGACGCGGTCAACGAACATTTACAAACGCACTCCGGCGACCAACTTTTCTTATGCTTGATCTGCAAAGATAATTTTAGCTGTCAGGAAGAACTAAACGAACACGTCCAAACTCACAGCCAGAATTACGAATGTATCTATTGTAAACAAATGTTCGAACAAGAAGAAGTTCTTATCGATCATTTTGACAGATTACATCGGAAAGACGACGCGTACGAGTGTATCTATTGTAAACAATATTTCGAAACCGCCGCAGAGTTGAATTACCATAGCGATAcgcacaaaaatgaaaatcccttCAAATGTCAATTGTGCGGCGAACGATTCTACACCGAGTCTTTGCTAACGAAACATCTCAAACTGCACGAAAGTACGAAATCCTTCGTTTGTTCGTATTGTAATCGCAGTTTCAGCCAGAAAGGTAATTTGAACACGCATATTAGACGGCACACCGGCGAAAGACCGTTCAAATGCAACGGATGCAATAAAATGTTCAGCGATTACTCGACGTTCACCAGACACGTACGAGTACACACCAAGGAGAAACCATACACTTGCGAGTACTGTTTACGACCATTTTCGCAGCTGTCCAATTTGAAATGCCATATTCAAAGACGTCACAACCGAGTCGAAAGTAAATACGAATGCGAATTTTGCGTGAAACAATTCGACAACAAAGAAGAATTACTCGAACATTTGGAAGTGCACACCGGTGATAAACCCTACGTCTGTCAAGTATGCCTGAAAAGCTTCAGCCAGTGGGCGAATCTGAAATGCCATATTCTGAGCGGCCACCACGCCAAGCAAGGTTTACTAATTTGCGAATTCTGCGAAGGTTACTACGATTCGCAAGAAAGCTTGGAAGCGCACTTGAAGACGCACACCGGTAAAAACCCCTACATTTGCAACGTTTGCCAAAAAACGTACAGTTCCTCGGCCAATCTAAAGAAACACGTCAAGATTCACACCGCCATCAAAAACTTCCCTTGCGACATTTGCAATAAATCCTTTTACACGCATTCCCTACTGAAAAACCATCTAATGACGCATCAAGGTGACAAACCGTTCAGCTGCGAATACTGCGACAAGAGCTTTATCAACAAATACCGTTTGAAAAGCCATACCTATATTCATACCGGTGAAAAACCCTACCAATGCGAGTACTGTAACCGATTTTTCCGCAACCAGTCCGTACTCAGACGTCATATCCGCGTGCACACCGGCGAACACCCTTACTCTTGTCCCTACTGcaagaaaactttcaaaacgcACTCTGAAAATAAACTGCACATCAGAATCCACACCGGAGAAAAACCCTACACGTGCGCTACCTGTCACAAAACCTTCCGTACGCATTCGGCCATCAAAATACACCAGAAAACTCACTCCGTCGATCATAGGTTATTCGGTATTCAGAAATGTAGCTGGTGTAATTCCAAATTCCGCAACTTGGAAGATTTACGCTTACACGTGAGGAAATTACACGACAGCGCGTGGGAGCCTGAAAATATGGCCAGTTTGACCGACGAAGAGGTGATGGAAGTGACCGTACCGCACAACGAAGACGAATTCGACGAAGATGAAGAAGTCGAGGACGAGGAAGAAGAAGTCGAAGAATTCGAACTTATCGGACTCGACGATGTGATCAAAACCGAGCCTATGGATAGCGACGTTGtcgaagaaattcaattttttgtgtaa
Protein Sequence: MECTESVFIEEGACETVIADDVVTEEVVQAEEPPQEEEEALPSANEENDQWYIYLLQADQALHQLHGTKVEIELPKEEVEVIDGTYECEIEDMTQLQEGVPVENEEQFAYNIDAIRQIQEAKVEIQQDGFNYTIDEVNGFKHEPPEHIENFDPNIYNEYASEVIIGDEVVIGNEVVIETENDLMTYANDGVSEYPFHCQHCNKSFHKRNKLEQHERMHTGERRFKCPHCEKGFNQRVNLDNHIRVHTGEKPFTCEYCHKSFSQQGNLKTHMQKHLYVEYFICPHCKDNFRSKAELNEHIKTHKDNVILECPFCQMVFNNEDAVNEHLQTHSGDQLFLCLICKDNFSCQEELNEHVQTHSQNYECIYCKQMFEQEEVLIDHFDRLHRKDDAYECIYCKQYFETAAELNYHSDTHKNENPFKCQLCGERFYTESLLTKHLKLHESTKSFVCSYCNRSFSQKGNLNTHIRRHTGERPFKCNGCNKMFSDYSTFTRHVRVHTKEKPYTCEYCLRPFSQLSNLKCHIQRRHNRVESKYECEFCVKQFDNKEELLEHLEVHTGDKPYVCQVCLKSFSQWANLKCHILSGHHAKQGLLICEFCEGYYDSQESLEAHLKTHTGKNPYICNVCQKTYSSSANLKKHVKIHTAIKNFPCDICNKSFYTHSLLKNHLMTHQGDKPFSCEYCDKSFINKYRLKSHTYIHTGEKPYQCEYCNRFFRNQSVLRRHIRVHTGEHPYSCPYCKKTFKTHSENKLHIRIHTGEKPYTCATCHKTFRTHSAIKIHQKTHSVDHRLFGIQKCSWCNSKFRNLEDLRLHVRKLHDSAWEPENMASLTDEEVMEVTVPHNEDEFDEDEEVEDEEEEVEEFELIGLDDVIKTEPMDSDVVEEIQFFV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00194594;
90% Identity: -
80% Identity: -