Pmar004288.1
Basic Information
- Insect
- Paracoccus marginatus
- Gene Symbol
- tfip11
- Assembly
- GCA_900065295.1
- Location
- FIZT01055858.1:1-652[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-41 2.2e-37 129.4 4.3 176 275 2 102 1 102 0.99 2 2 0.023 1.6e+02 1.9 0.0 157 190 114 146 107 159 0.64
Sequence Information
- Coding Sequence
- AGCGTATATCCGACCATCAGGCATAAACTTTCCAAAGCCTTGATCAGTTGGCATCCGTCCGACGGGTCGGCTAGATTAATGCTGCAGCCATGGATGAGTGTATTCGAGCCCGGAGAAATGAACGCTTTTCTGGTGAACAATATCGTGCCAAAATTACGTCTCGTTTTGCACGATTTCGTCATTAATCCTCATCAGCAATGCCTAGATAATTGGAAATGGGTGATGGAATGGTCTGAGATGATACCTCCGCATACCATGGCTCAACTATTAGATCAAAGTTTCTTTCCTAAATGGTTACAAACTCTCAACGCCTGGCTGCTAATGAATCCCGATATTGATCAGATTAATCAATGGCTAACTGGCTGGAGGAGTCTTTTACCCGATAATATGAAGACGCAGCCCATCGTCAATGatCATATTAAAACTGCAATGAACATGGTTAGTCACGCTCGAGGTGGACCAACGATTTTAGCAGAAGAACGTAG
- Protein Sequence
- SVYPTIRHKLSKALISWHPSDGSARLMLQPWMSVFEPGEMNAFLVNNIVPKLRLVLHDFVINPHQQCLDNWKWVMEWSEMIPPHTMAQLLDQSFFPKWLQTLNAWLLMNPDIDQINQWLTGWRSLLPDNMKTQPIVNDHIKTAMNMVSHARGGPTILAEER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -