Pxut001640.1
Basic Information
- Insect
- Papilio xuthus
- Gene Symbol
- -
- Assembly
- GCA_000836235.1
- Location
- NW:971995-983856[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0025 0.14 12.4 1.1 1 23 260 283 260 283 0.95 2 12 0.55 31 5.0 1.8 2 23 292 313 291 313 0.90 3 12 0.012 0.67 10.2 2.4 1 23 317 340 317 340 0.98 4 12 0.00096 0.055 13.6 1.6 3 23 347 368 345 368 0.91 5 12 0.012 0.68 10.2 1.0 2 21 373 392 373 393 0.91 6 12 3.8e-05 0.0022 18.1 0.2 2 23 406 427 405 427 0.94 7 12 2.1e-05 0.0012 18.9 0.4 1 23 432 454 432 454 0.98 8 12 5.7e-05 0.0033 17.5 5.0 1 21 463 483 463 488 0.94 9 12 0.00056 0.032 14.4 2.0 1 23 496 519 496 519 0.92 10 12 0.0038 0.21 11.8 0.2 1 23 525 548 525 548 0.96 11 12 0.018 1 9.7 0.4 3 19 562 578 560 579 0.89 12 12 0.0043 0.25 11.6 1.2 1 23 592 615 592 615 0.98
Sequence Information
- Coding Sequence
- ATgaaggaaataaatataaacatcgaAGGATATAATGTAAACGGCATTTGTGTCGGATGCCTCAACTACAATCGCAAAATGTTTTACCGCGACgaagttaaagaattttataaaatatgggCCAAAATAGATGTTCCAGATGGCTTAACAATCCAAGTGTGTTGGGAATGTCTTGCATCAGTCACATCAGCAGTTCGATTCCGAAAACAAATTCTGAAAGCATATAATGTGCTTATGGAGTATTCAAATAAGcaaatatttttaaattctccgaatgattttaaaaatcatgctATGAGTCGACTTACTTCATCAAACTTGATGTATAACACAGTTATATTACATCAGATAAAAGAAGAAGATAGcattaatatagatattattaaagaagaaGATACAGATAAATATGAAGAGAATTTGGATTCACAATTGAAACAAATAGAAAGTCcaaaaatagaagaaataacAGAcagttattttgataatttccTAGAAGAATCACAAAATCAATCCTCCGATGATGATATTCAATTGTCTaagttaaaaactaaaaagaaaaaaagaaagaacaaAGGGGATAAAAGTAAAAGGAAAGATGATAAATTACCAGTTACTTTTGTATCTGagattgataataaattagatgAAACAGTGAAACGTTctagaaaattaaagaatttaccAGAAGATTTTGTAGAACTTTATACGATGAGTGAAGAAGAAATGTGGCAAGTCCGAGCTAAAGATGTGGCAAGAGATGAATTTGTAGCACtcaaatataaatgcgatgattgtttaacaagttttaataCGGAGAAACTTatgaattatcatttaaatggGAAACATGTTCTGAAAAGCGCGGCAGACGTACAATGTGACGTTTGTAAAGCTTTCTTCATAACACGTGACAATATGTCATGTCACCGCTCGTTGCATCTGACAGCGTATAAATGTCGTATCTGCGGTGATGTCACGACAAGAAAACGTTGCATACTAAAACATGTGAGAACAGAACATGGAGCACCAGGGACAGCTTGTGTTACTTGCGGAAAGACTTTCTCTTCAGAATCGAAATTGAGTTATCACAGAGGTGTGTGCCATAAGGAAAGTCCTCAGTGTGATTGTTGTGGGAAAGTCTTTGCCAGCAAATTGACacttaaatatcatttaaaaatactAACACCAAAGCAACCTGAGGAAAAAGTACATTTGCCGTGTAAAGGATGtgacaaagttttttattctaaaaaaagttatagagCTCACgtTGTTATCCACAACGGTGAGACATACCCGTGTCCTATCTGCGGCAAACAGTTCCAATGGAAGCGTAACCTCGCGCGGCACACGCGTAATCACCGCGAGAGAGACGCGGGTGCGACGCACGAATGCCGGGAATGTGGGAAGACGTTTTCTAGTAGGGATTGCTATAATAATCATATGAGATTAAGTAAACGACATGTCCCTGAAGACGCGTACATccACTCGTGTAACTATTGTGGTAAAAAGTTCGCGTCAAAATGGTGTATGGTGGATCATATTGATTGGGATCATctcaaagttataaaatatcaatgcaGTGTTTGCTTAAAGgcGTTTAAAACAGCAAAAATAATGGTCGCCCATATGAACAATATACATGAAGgtaaaaagaacaaagaacCTGAATCTGAACATTTGTGTGAAATATGTGGGAAATCTTATAAGTCCGTAAAACGTCTAAAAGGTCACGTATGGGCAATGCATACAAATCGTTCATCAACAAAGAcattcaaatgtaaattatgtcCAGCAACATTCACCTGGCAGACatctatatataaacatatgaaGATGATGCATGACTCCAGTAAGAGGAATAAGCAAACCAGAATAGCAACTGTTAAGAAGCAAGATCTTTACCCGGAAGTAGAGTTGTCAAATAGAATGGATTATTTTCAGCagaatttagtaaataatatacagaATATGGTACAACCCACACCTTTAcatattgtacaaaatattgtcTAA
- Protein Sequence
- MKEININIEGYNVNGICVGCLNYNRKMFYRDEVKEFYKIWAKIDVPDGLTIQVCWECLASVTSAVRFRKQILKAYNVLMEYSNKQIFLNSPNDFKNHAMSRLTSSNLMYNTVILHQIKEEDSINIDIIKEEDTDKYEENLDSQLKQIESPKIEEITDSYFDNFLEESQNQSSDDDIQLSKLKTKKKKRKNKGDKSKRKDDKLPVTFVSEIDNKLDETVKRSRKLKNLPEDFVELYTMSEEEMWQVRAKDVARDEFVALKYKCDDCLTSFNTEKLMNYHLNGKHVLKSAADVQCDVCKAFFITRDNMSCHRSLHLTAYKCRICGDVTTRKRCILKHVRTEHGAPGTACVTCGKTFSSESKLSYHRGVCHKESPQCDCCGKVFASKLTLKYHLKILTPKQPEEKVHLPCKGCDKVFYSKKSYRAHVVIHNGETYPCPICGKQFQWKRNLARHTRNHRERDAGATHECRECGKTFSSRDCYNNHMRLSKRHVPEDAYIHSCNYCGKKFASKWCMVDHIDWDHLKVIKYQCSVCLKAFKTAKIMVAHMNNIHEGKKNKEPESEHLCEICGKSYKSVKRLKGHVWAMHTNRSSTKTFKCKLCPATFTWQTSIYKHMKMMHDSSKRNKQTRIATVKKQDLYPEVELSNRMDYFQQNLVNNIQNMVQPTPLHIVQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141120;
- 90% Identity
- iTF_01144766;
- 80% Identity
- -