Pdem019794.1
Basic Information
- Insect
- Papilio demoleus
- Gene Symbol
- -
- Assembly
- GCA_029286655.1
- Location
- JAGSMY010000027.1:1355353-1366318[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00064 0.062 14.3 1.5 1 23 261 284 261 284 0.96 2 12 0.78 76 4.6 1.0 2 23 293 314 292 314 0.87 3 12 0.072 7 7.9 0.1 1 23 318 341 318 341 0.96 4 12 0.00082 0.079 14.0 2.5 3 23 348 369 346 369 0.92 5 12 0.013 1.3 10.2 1.0 2 21 374 393 374 394 0.91 6 12 0.00012 0.011 16.6 0.2 2 23 407 428 406 428 0.94 7 12 2.3e-05 0.0023 18.8 0.4 1 23 433 455 433 455 0.98 8 12 6.3e-05 0.0061 17.5 5.0 1 21 464 484 464 489 0.94 9 12 0.00077 0.074 14.1 1.5 1 23 497 520 497 520 0.91 10 12 0.0041 0.4 11.8 0.2 1 23 526 549 526 549 0.96 11 12 0.014 1.3 10.1 0.4 3 19 563 579 561 580 0.89 12 12 0.0047 0.46 11.6 1.2 1 23 593 616 593 616 0.98
Sequence Information
- Coding Sequence
- atgaaggaaataaatataaacatcgaAGGATACAATGTTAACGGCATTTGCGTCGGGTGTCTCAACTATAATCGCAAAATGTTTTATCGAGACGAAGTTAaggaattttacaaaacatggGCAAATATAGATgtaCCAGATGGTTTAACAATTCAAGTATGCTGGGAGTGTCTTGCAACAGTAACATCCGCAGTTCGATTCCGACAACAAGTACATAAAGCATATAATGTGCTTATAGAGTATTCAAATAAGcatatgtatttaaattcaccGGACGATTTTACAAAACATGCAATGACACGGCtatcaacaaaattaaacaatgacACAACTATGATACATCaaattaaagaagaaaatgatataaatgtggatattattaaattagaagaTGAAAATGACAAATTTGATCAGAATTTGGATTCACAATTAGAGTCAATAGAAAGTCCTAAGAAAGAAGATATATCTGATAATTACTTTGAGAACTTTCTAGAAGATTCTGTACTGCGCAATCAGTCCTCCGATGACGATATCCAACTATCTGAATTGAagagtaaaaagaaaaagaagaggaaagaaaataaaagtaaaaagaaaatgaaagaaaagTTACCAGAAACTTTTGTTTCAGAGGTTAATAAATCAGAGGAAGCATTGAAACGTTCTAGAAAATTAAAGAACTTGCCAGAAGATTATGTTGAACTGTACACTATGAGTGAAGAAGAGATGTGGGTAGTTCGTGCTAAAGATGTGGCTAGAGAAGAATTCGTagctttgaaatataaatgtaacgaTTGTCTCACAAGTTTCAATACTGAGAAGTTAATGAATTATCATATGAATGGAAAACATGTAttgAAAAGTTCCGCGGACGTGCAATGCGACATCTGCAAagcttattttataacacgCGAGAACATGTCATGCCACCGCGCACTACATCTAACAGCGTACAAATGTGTCATTTGTGGTGATATCACCACACGCAAGAGGGGTATTTTGAAACATGTTAGAGCTGAACATAACGCGCCTGGGACTGCGTGCAAAACTTGCGGGAAGACTTTCAATTCAGAATCGAAGTTAAGTTATCACAGAGGTGTGTGTCATAAAGAAAGTCCGCAGTGCGATTGTTGTGGGAAAGTGTTTGCAAGCaaattgacattaaaatatcatttaaaaatattAACTCCGAAACAGCCGGAAgaaaaagtacatttacccTGTAAAGgttgcgataaaatattctattctaagaAAAGTTATAGAGCTCATGTCGTGATCCACAACGGTGAGACGTACCCTTGCCCGATCTGCGGCAAACAGTTCCAATGGAAGCGCAACCTCGCGCGACACACGCGCAACCACCGCGACAGGGACGCGGGCGCTACCCACGAGTGTAGGGAGTGCGGCAAGACGTTCTCCAGTAGAGACTGCTACAACAACCACATGAGACTCAGCAAGCGGCACGTGCCTGAAGATGCGTACATccACGCGTGTAATTATTGCGGTAAAAAGTTCGCGTCAAAATGGTGTATGGTGGATCATATAGACTGGGATCATCTCAAAGTCATTAAGTATCAATGTAGCGTCTGTTTAAAGgCTTTTAAAACAGCAAAAATAATGGTAGCACATATGAATAATATACatgaaggtaaaaaaaataaagaaccCGAGTCTGAACATTTGTGTGAAATTTGCGGGAAATCCTATAAGACTGTAAAACGTCTTAAAGGTCATGTATGGGCGATGCACACAAACCGTTCGTCGACAAAGACATTCAAATGTAAACTGTGCCCGGCTACATTTACTTGGCAAAcatctatttataaacatatgaaGATGATGCACGACTCCAGTAAAAGGAATAAGCAACCAAGAATAACGACGGTGAAGAAACAAGATCTATACCCGGAGGTGGAACTTACAAATAGGATGCAATACTTTCAACAGAATTTagcaaataatatacaaaacatgGTACAAGTTCATCCCACACCAATacatattgtacaaaatattgtataa
- Protein Sequence
- MKEININIEGYNVNGICVGCLNYNRKMFYRDEVKEFYKTWANIDVPDGLTIQVCWECLATVTSAVRFRQQVHKAYNVLIEYSNKHMYLNSPDDFTKHAMTRLSTKLNNDTTMIHQIKEENDINVDIIKLEDENDKFDQNLDSQLESIESPKKEDISDNYFENFLEDSVLRNQSSDDDIQLSELKSKKKKKRKENKSKKKMKEKLPETFVSEVNKSEEALKRSRKLKNLPEDYVELYTMSEEEMWVVRAKDVAREEFVALKYKCNDCLTSFNTEKLMNYHMNGKHVLKSSADVQCDICKAYFITRENMSCHRALHLTAYKCVICGDITTRKRGILKHVRAEHNAPGTACKTCGKTFNSESKLSYHRGVCHKESPQCDCCGKVFASKLTLKYHLKILTPKQPEEKVHLPCKGCDKIFYSKKSYRAHVVIHNGETYPCPICGKQFQWKRNLARHTRNHRDRDAGATHECRECGKTFSSRDCYNNHMRLSKRHVPEDAYIHACNYCGKKFASKWCMVDHIDWDHLKVIKYQCSVCLKAFKTAKIMVAHMNNIHEGKKNKEPESEHLCEICGKSYKTVKRLKGHVWAMHTNRSSTKTFKCKLCPATFTWQTSIYKHMKMMHDSSKRNKQPRITTVKKQDLYPEVELTNRMQYFQQNLANNIQNMVQVHPTPIHIVQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01149048; iTF_01147602; iTF_01149821; iTF_01144766;
- 90% Identity
- -
- 80% Identity
- -