Ppol001758.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio polyxenes
Gene Symbol
-
Assembly
GCA_026167825.1
Location
JAOPJD010000020.1:5185276-5186744[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.11 9.6 7.4 0.8 1 22 155 176 155 178 0.88
2 10 4.4 3.9e+02 2.3 0.4 1 23 181 204 181 204 0.80
3 10 8.2e-05 0.0072 17.2 1.1 1 23 206 229 206 229 0.97
4 10 0.012 1.1 10.4 1.9 2 23 233 254 232 254 0.97
5 10 0.00043 0.038 14.9 2.1 1 21 258 278 258 279 0.95
6 10 0.00039 0.034 15.1 0.2 1 23 297 320 297 320 0.94
7 10 1.9e-06 0.00017 22.3 2.1 1 23 326 348 326 348 0.97
8 10 0.00011 0.01 16.8 0.2 1 23 354 376 354 376 0.98
9 10 0.00037 0.032 15.2 0.4 1 23 382 405 382 405 0.95
10 10 5.4e-05 0.0048 17.8 2.9 2 23 411 432 410 433 0.94

Sequence Information

Coding Sequence
ATGATAGATGATATTTGTATAAATACTCTAGTGTCTAATGTTGTAGCAGAAAACCGTTTTAGTCATTGCAGGTTATGTCTGTGTGCTATTGGAGACCAATACGTACGTTTCACCGATAAAGTATCACTGGATCCTGAAAACGATACATTTCAGCCACTGAATAAAGTTCTTATAAAATTACTTGGTATAAATGTTTGTGATGAAGTTCCAGGGATCGATGCGGTGTGCACTTCTTGTGTCGACAAAGTTCTTGAAACTGCAAGATTTATGAAACTATGCGAAAAGTCGACTAACTTGATAAACAAAGTATTCACCAATCTCTCCAATGCATTGAATGTGGAAATAGATTCAAAGAAGGAAAATCAAACTCTGTACATAGTTGTTGAAGAAAATAATTCACAATTACTTTGGATGAAAAAAGAAGAAAAGCGGAGGAAAAAAAAGTATATAGAAAATGAATATTTTGATTGTAACAACTGTAATGAAATATTTGGGAGTTGTTTGGAATTTAAAGCTCATAACCTAGCTGTACATGATATTTTCACTTGTGACAAATGTTATGACACCTTTCTTAGTGACACTCAGCTTGCACTACATGAGAGTACAGTGCACAGGTACCAATGTCCTGATTGCTCCCAGTGCTTGTCATCTGAGAGTGAATTTAATGAGCATCAAGAAAAAATCCATAGCATGGTGGTATGCCAAGAGTGTGGTAAGATCTGCCATGGCACAGATAAATTAAGGATACATGTACAAAAACATAATCAAAAATTTTCATGTCCCAAATGTAGTAAAAAATATACAACTAGAGATTTTTACACAAAACATGTTAAACTTTGTGTCAAAGGTCTTATAGACCCTCACCCGACAAGGAATAACAGAAAAGACTACACATGTGAGAAATGTTCCAAAGCATATGGCACTCCGGGCGGCTTGAGAGTACACAATAGGTTTGTCCATGGCAATGCCAAGCCTCATATCTGCCATGAATGTGGCAAACAGTTTACTGCTCCTAGCTATTTAAAAATTCATATGATTAAACATACAGGTGAAAAAAACTTTGTATGTGATTTATGTGGAGGCAGATTTGTCTCTAAGGAAGCTTTATTGTATCATACACGGAGACACACTGGGGAGAAACCCTACAGCTGTAAGATTTGCAACGAAAGGTTTGTCAATGCTTCTGCACGAGCGGAACACATAAAGTTTAAGCATATAGGACCTACTTTGATGTGTGATATTTGTCCGAGAAAGTTTGTTACTCCACATTTCTTAAAACAACATATAAGCAGACATCATGATCCAACTAGCAAACTTTACTATGGTAGGAACATGATTCCCCCAAACATGCCCGGTGAACAGAACATGAGAACTTTTAAAGTTAATTCACAGTAA
Protein Sequence
MIDDICINTLVSNVVAENRFSHCRLCLCAIGDQYVRFTDKVSLDPENDTFQPLNKVLIKLLGINVCDEVPGIDAVCTSCVDKVLETARFMKLCEKSTNLINKVFTNLSNALNVEIDSKKENQTLYIVVEENNSQLLWMKKEEKRRKKKYIENEYFDCNNCNEIFGSCLEFKAHNLAVHDIFTCDKCYDTFLSDTQLALHESTVHRYQCPDCSQCLSSESEFNEHQEKIHSMVVCQECGKICHGTDKLRIHVQKHNQKFSCPKCSKKYTTRDFYTKHVKLCVKGLIDPHPTRNNRKDYTCEKCSKAYGTPGGLRVHNRFVHGNAKPHICHECGKQFTAPSYLKIHMIKHTGEKNFVCDLCGGRFVSKEALLYHTRRHTGEKPYSCKICNERFVNASARAEHIKFKHIGPTLMCDICPRKFVTPHFLKQHISRHHDPTSKLYYGRNMIPPNMPGEQNMRTFKVNSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01144046;
90% Identity
iTF_01141156;
80% Identity
-