Phel005392.1
Basic Information
- Insect
- Papilio helenus
- Gene Symbol
- topi
- Assembly
- GCA_026546675.1
- Location
- JAOCNA010000020.1:3420488-3422134[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.42 75 5.3 2.6 1 22 155 176 155 178 0.88 2 10 0.045 8 8.4 0.2 1 23 181 204 181 204 0.96 3 10 0.0039 0.7 11.7 3.7 1 23 206 229 206 229 0.96 4 10 0.036 6.3 8.7 1.9 3 23 234 254 232 254 0.96 5 10 0.00015 0.027 16.1 1.4 1 20 258 277 258 279 0.95 6 10 0.00062 0.11 14.2 0.2 1 23 297 320 297 320 0.94 7 10 1.5e-06 0.00026 22.5 0.7 1 23 326 348 326 348 0.97 8 10 0.15 26 6.7 0.2 1 23 354 377 354 377 0.78 9 10 0.00031 0.056 15.1 0.4 1 23 383 406 383 406 0.95 10 10 4.6e-05 0.0083 17.8 2.9 2 23 412 433 411 434 0.94
Sequence Information
- Coding Sequence
- ATGATTGATGATATTTGTTTAAATACTCTTGTGTGTAATGTCGTAGCACAGAATCGTTTCAGTCATTGCAGGTTATGTCTTTGCCTGATTCAAGACCAATATGTACGATTCACCGACAAAGTTTCATTGGATCCTGAAAACAATATATTTCAGCCACTTAATGAAGTTCTTTTAAAATTACTCGGTAAAAATGCTTGCGATGAAGTCCCAGGTATCGATGCGGTATGTACGTCGTGCGTCGACAAAGTTCTTGAAACTGCAAGATTGATGGAATTATATGAAAAGTCGTCTAAAATAATTAACAACGTATTCAACAATCTCTCGAATGCATTAAATAAGGACATAGATTCAATAAAAGAAAACCAAGCTTTGTACATAGTTGTTGAAGAAAATAATTCGCAATTACTTTGGTTGAAAAACGAAGAAAAGCGGAAGAAGAAAAAGTATAATGAAAAAGAATATTTTCATTGTAGCAATTGTAAAGAAATATTTGGTAATTGCTTAGAATTTAAAGCTCATAATTTAGCTGTACATGATATTTACACATGTGACAAGTGTTACATTACTTTCCTAAGTGACTCCGAGCTCATACTACATGAGAGTACAGTGCACAGATACCAATGTCCTGACTGTTCCCAATGCTTGTCATCCAAGAGAGAATATAGTGAACATCATGAGAAAATCCACAGCATTGTGATATGCCAGGAATGTGGCAAGATCTGCCACGGTACAGATAAATTAAATATACACGAACAAAAACATAGTCAAAAATTTTCATGTCCCAAATGTAATAAAAAGTATACTACTAGAGATTTTTATACAAAACATGTTGAACTATGTATCAAAGGTCTTATTGACCCACACCCGACAAGAAATAATAGAAAGGACTACACATGCGAGAAGTGTGCTAAATCGTATGGCACTCCAGGTGGTTTACGAGTACACAATAGATTTGTGCATGGCAATGCCAAGCCTCATGTTTGCAATGAATGTGGCAAACAGTTTACAGCTCCTAGTTATTTAAAAATACACATGGTTAAACATACAGGTGAAAAGAACTTTATATGTGATTTATGTGGAGGCAGATTTGTCTCCAAGGAAGAAGCATTACTCTATCATACAAGGAGGCACACCGGAGAGAAACCCTACAGTTGTAAGATTTGTAATGAAAGATTTGTCAATGCTTCAGCAAGAGCGGAACATATAAAGTTCAAGCATATAGGACCTACTTTAATGTGCGATATTTGTCCGAGAAAATTTGTCACTCCACATTTCTTGAAGCAGCATATAAGCAGGCATCATGACCCAACTAGCAAACTTTATTACGGTAGGAATACAATTCCTCCAAACATGCCTGGGGAACTGAACATGAGAACTTTTAAAATTAATTCACAGAAATGA
- Protein Sequence
- MIDDICLNTLVCNVVAQNRFSHCRLCLCLIQDQYVRFTDKVSLDPENNIFQPLNEVLLKLLGKNACDEVPGIDAVCTSCVDKVLETARLMELYEKSSKIINNVFNNLSNALNKDIDSIKENQALYIVVEENNSQLLWLKNEEKRKKKKYNEKEYFHCSNCKEIFGNCLEFKAHNLAVHDIYTCDKCYITFLSDSELILHESTVHRYQCPDCSQCLSSKREYSEHHEKIHSIVICQECGKICHGTDKLNIHEQKHSQKFSCPKCNKKYTTRDFYTKHVELCIKGLIDPHPTRNNRKDYTCEKCAKSYGTPGGLRVHNRFVHGNAKPHVCNECGKQFTAPSYLKIHMVKHTGEKNFICDLCGGRFVSKEEALLYHTRRHTGEKPYSCKICNERFVNASARAEHIKFKHIGPTLMCDICPRKFVTPHFLKQHISRHHDPTSKLYYGRNTIPPNMPGELNMRTFKINSQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01141156; iTF_01148299; iTF_01142637; iTF_01139189; iTF_01140409; iTF_01149849; iTF_01141882; iTF_01144767; iTF_01146725; iTF_01149061; iTF_01147599; iTF_01145461; iTF_01143322;
- 90% Identity
- iTF_01145461;
- 80% Identity
- -