Ppol016251.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio polyxenes
Gene Symbol
sip1
Assembly
GCA_026167825.1
Location
JAOPJD010000010.1:5868952-5876891[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.3e-54 5.4e-51 174.3 7.1 1 273 310 577 310 579 0.88
2 2 2.5 1.1e+04 -3.8 0.0 79 103 597 623 587 634 0.48

Sequence Information

Coding Sequence
ATGTCTGACGACGAAGTAATACCACCAATTGGGTTTGTGGCTGGTGGGGTACAACAAGCGGGAAAAAAGAAAGATCCAAATAAAGAATTAGAATCAAAAGAAGCATCAACATCCAGACCATTGATAGTGGATAGTTCTGATGAAGAGGCAAATGATGAACCACTACCTACTGACACTGCTGGAATAAGAAGACAAGGTCAAGGGCTGAAACCAGCCAACCTTGGTGGCAGTGTTGGAGCATGGGAGAAACATACTAAGGGCATTGGTGCTAAACTACTCCTACAGATGGGTTATCAACCGGGTAAAGGTCTTGGTAAAGAACTTCAAGGTATTTCTGCACCAGTGGAGGCGACTGTAAGGAAAGGGCGCGGAGCTATTGGAGCTTATGGACCTGAAAAATCGACGCAAAAAGCCAAAAAAGAAGAGGAAAAACGGCTTAAAGAGAAAGAAGATCAAGAAAAGGGGACCTCAGAGAAGAATTACAACTGGAAGAAGTCGCACAAGGGACGTTACTTCTACAGAGATGCAGCAGATGTTATACAAGAGGGTAAACCCACGATGCATACTATTGGCAGTAGTGAGCTGGCTCGTGTACCAGTAATAGATATGACGGGTAAGCAGAAGCGTGTACTGAGTGGATACCACGCGCTGGCGGCCGCCGCACCTCGCTACGAGCACGAGCCGCGCCGTCAGCTGAGACACTTTTCCGCTCCTCAGCTCACACACAACTTACAGCTTGTCGTTGATAGCTGCGAACAGGACATTATCCAAAATGCTCGTGAACTTCAAGCGGCGGAAGATGAAATAGTTGTATTAGAAAGAGACTTAGAAGATTGCAATATAAAGCTGCAAGAGCAGGACGTGGTGATAGAAAAAGTGCAAGCTATCACTCACAGGATAGAAGAGTTAAACAAACCTGATCTATCCCTGGAGAAATGTTATGAAGTTCTAGAAGATTTGATGGAGTCATTTCCTTTGGAATACGAAATGTTCGGTTTGGGTACAATAGGTGGGACTATAGTGAGTCCATTGATCAGTGCACTGCTGGCTCAGTGGGAGCCGCTGCAGTGTCCTGACGAGCCTGTACCCGCGTTCCTCAAGTGGAAGAAGTTGTTAACAGAACCAGCGTATAACAGTCTACTCTGGCAACACTTTATACCAAGGATTACATCTGCAGCTGAGGTGTGGAACCCCCGCAGACCAGAGCCGATGTTGGCGGTGTTCGAGCGGTGGGCAGTGGCGTGCCCCGAGTGGATCCTGCAGACGTGTGCAGCTCGCAGTGTGGTGCCGCGTCTGCTGGCCGCTGTGCGAGCCTGGGACCCCACAGGGGACACCCAGCCGCTGCACCATTGGGTCCTACCTTGGCATCAGCTAGCTGGTAGTGAGTTGAACACGAGCACATATCCTCTGATCCGGTCTCGTCTGGCGGCTGCACTGTCAGCATGGCATCCAGCTGATGGGTCTGCTCGAGAGCTGCTGTCAGCATGGCGCGGAGCTTGGGGCCCGGCGCTTCGCCCCCTGCTGCAGCATCATGTGTTGCCAAAACTGGAGCACTGTCTGCAGCATGCACCCATTGAACTGGTCGGCAGGGAGAATACTGCGTGGTCGTGGTGCGTGCAGTGGGTGGAGGTGGCGGCTGCGTGGTCGTGGTGCGTGCAGTGGGTGGAGGTGGCGGGTGCGGGGGGCGTGGCCGCGCTGGCTGCGCGCGCGCTGCTGCCGCGCTGGCTGGCCGCGCTCGCCGCGTGGCTCAACACTGCGCCGCCGCACGCCACTGTACTCAACTCTTACACCAACTTCAAGAAAATGTTCCCCGAAGAGGTTTTAAAAGAGCCAGCTGTTCGTGACGCTTTCCGTAAAGCGTTGGACATGATGAACAGAAGTACTGACATTGACACCGTGGAACCTCCTCCTCCACCTCGCTTTACCCTTCCTGACACCAAAGAAGTGTCAAAGATCAATGAGATATTAGCCATCAATGAGATATTAGCCGTCACCAACCCACATAAGAGTTTCTCTGAACTTCTAGAAACTAGATGTATAGAAAAAGGGATAACTTTTGTACCAATACCGGGGAAGACCAGAGAAGGAAGACCATTGTACAAGATTGGAGCGATGCAGTGTTATGTAATAAGAAATGTTATTATGTACTCGGAAGATGGTGGCAGATCTTTTGGACCGATTGGTATGGACAGATTATTGAATATGGTTGAAGAATGA
Protein Sequence
MSDDEVIPPIGFVAGGVQQAGKKKDPNKELESKEASTSRPLIVDSSDEEANDEPLPTDTAGIRRQGQGLKPANLGGSVGAWEKHTKGIGAKLLLQMGYQPGKGLGKELQGISAPVEATVRKGRGAIGAYGPEKSTQKAKKEEEKRLKEKEDQEKGTSEKNYNWKKSHKGRYFYRDAADVIQEGKPTMHTIGSSELARVPVIDMTGKQKRVLSGYHALAAAAPRYEHEPRRQLRHFSAPQLTHNLQLVVDSCEQDIIQNARELQAAEDEIVVLERDLEDCNIKLQEQDVVIEKVQAITHRIEELNKPDLSLEKCYEVLEDLMESFPLEYEMFGLGTIGGTIVSPLISALLAQWEPLQCPDEPVPAFLKWKKLLTEPAYNSLLWQHFIPRITSAAEVWNPRRPEPMLAVFERWAVACPEWILQTCAARSVVPRLLAAVRAWDPTGDTQPLHHWVLPWHQLAGSELNTSTYPLIRSRLAAALSAWHPADGSARELLSAWRGAWGPALRPLLQHHVLPKLEHCLQHAPIELVGRENTAWSWCVQWVEVAAAWSWCVQWVEVAGAGGVAALAARALLPRWLAALAAWLNTAPPHATVLNSYTNFKKMFPEEVLKEPAVRDAFRKALDMMNRSTDIDTVEPPPPPRFTLPDTKEVSKINEILAINEILAVTNPHKSFSELLETRCIEKGITFVPIPGKTREGRPLYKIGAMQCYVIRNVIMYSEDGGRSFGPIGMDRLLNMVEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00957964;
90% Identity
iTF_01140932;
80% Identity
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