Basic Information

Insect: Papilio polytes
Gene Symbol: stc
Assembly: GCA_000836215.1
Location: NW:5639168-5646104[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.6 9.8e+03 -3.8 1.6 15 19 470 474 469 474 0.81

2 12 0.088 5.3e+02 0.2 0.8 4 10 504 510 502 510 0.91

3 12 2.6e-05 0.16 11.5 18.1 4 19 518 533 516 533 0.93

4 12 3.6e-08 0.00022 20.6 15.0 1 19 569 587 569 587 0.98

5 12 5.5e-06 0.033 13.7 12.2 1 19 628 646 628 646 0.99

6 12 1.6e-07 0.00097 18.5 13.8 1 19 687 709 687 709 0.88

7 12 2 1.2e+04 -4.8 2.2 6 10 739 743 739 743 0.94

8 12 0.011 64 3.2 7.3 1 11 749 759 749 760 0.93

9 12 0.03 1.8e+02 1.7 0.3 4 10 764 770 763 771 0.93

10 12 2.6e-06 0.016 14.7 14.0 3 19 778 794 776 794 0.92

11 12 2 1.2e+04 -4.1 0.3 9 11 822 824 822 825 0.79

12 12 0.00025 1.5 8.3 9.0 9 18 840 849 838 850 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.6	9.8e+03	-3.8	1.6	15	19	470	474	469	474	0.81
2	12	0.088	5.3e+02	0.2	0.8	4	10	504	510	502	510	0.91
3	12	2.6e-05	0.16	11.5	18.1	4	19	518	533	516	533	0.93
4	12	3.6e-08	0.00022	20.6	15.0	1	19	569	587	569	587	0.98
5	12	5.5e-06	0.033	13.7	12.2	1	19	628	646	628	646	0.99
6	12	1.6e-07	0.00097	18.5	13.8	1	19	687	709	687	709	0.88
7	12	2	1.2e+04	-4.8	2.2	6	10	739	743	739	743	0.94
8	12	0.011	64	3.2	7.3	1	11	749	759	749	760	0.93
9	12	0.03	1.8e+02	1.7	0.3	4	10	764	770	763	771	0.93
10	12	2.6e-06	0.016	14.7	14.0	3	19	778	794	776	794	0.92
11	12	2	1.2e+04	-4.1	0.3	9	11	822	824	822	825	0.79
12	12	0.00025	1.5	8.3	9.0	9	18	840	849	838	850	0.92

Sequence Information

Coding Sequence: ATGTCTCAGTGGAATAATTCTTACGGTTATAACAATCAATTCCAAGTGCCACCTAATTCTTGGAATGGAGATTTAAATGGGCAATATGTAAATCAACCTTACTATGATAACAGGCAATATGAGTCAAGCAACCAATATGTAAGTTTTGATGAATTCTTAACACAAATGCAGGGTAATGGTGTTCCACAAAATAATGCttctaattataataatgtacagTACCAAGCTTACCCAACTAATCAGTACAACTATCAGAATGTACCATCACAAAATCCACAGATGGAATACAATTATGGACACCAGAACCCTACTGCAAGTAATACTTTAGATACTTATTCAACCAACATTCAAAATCAATACAACCAATCTGTACCTGAATCAAATACTTTTTCAAATGAAGTTGTTATGAATTCAAAATTGACACCAACTGCAACAGAATTTGTACCAAAATGTTCCATAAATGTAGCCTCTACTTCCCAAACCACTTCTCAAGAAACTTCTGTTACACATAATGATGAACCAGATAACAGAAGTAGTACCACTAAATCATCAGAAAGCAATTGGAGAGAAAGACCAAGCAATAGCGAAACAGGTAACTCGCAAGTTGAAATGAACAATTTTGGTCgatatcaaaaaaattataaaaacacagaAGGAAATCGTAATCGTGAATCAAATAGTCGGTATGAAAAACGTAATAATGAATCAAAACACGAATCAAATGGACGCTATCGTAATGAACATAGTAATAATTATCAATCAAACCAACAAAATAAGGAATcatcaatacaaaataaagattCAGAAAACTCTGCAAACGATAATTATAATCATCAAAACGAAAATCAGCGAAATTTTGAAACTGGAAATAGAAACGAAACAAGAAGATAtgcaaatgaaaataatcaaTCAAAAGCAAATtctaaatcaaaaaataaagattcCGACGCAGGTCGAACTTTCTATAACAgctctataaataaaaatagccaAGATGTTAGAAACGGAAGAGGGGAAAGTTCTGGAAGAAATCGAAACTGGATTGGCAGTCAACGTGTCCGGACTGCGGAACGTAATAATATCGAAGATGAACAATATGCAAATACTTATATGCACTATAAAGATGACAGAGCAGAACGTgttgcaaataataataaacatgaaaaaaccGCTAGTCCAGTAAAAGGCAAAAACAAACCTACTAATGACTCAGGAGGCAACACAGCGATGACCCAACGTGAGCGTCTCACTGAGCAATTAGACAAGGGTACTTTGGAATGTTTGGTGTGCTGTGAACGAGTCAAACAGACAGATTCTGTTTGGTGGTGCTCAAATTGTTACCATGTTTTACATCTTAGGTGTATAAGAAAATGGGCCATGAGCAGTTTAGTTGAAGGCAAATGGAGATGTCCGGCGTGTCAAAACACGAATGAAGATATCCCAACGGAGTACCGGTGCATGTGTGGTGCTGTCAAATCACCAGAGTACTCTCGAGGCTCGGTCAGCGCTCACACTTGTGGCAAGTCATGCCGTCGGCCGAGGAACTGTCCCCATCCCTGCACTTTACTCTGCCATCCTGGGCCCTGTCCGCCTTGCCAGGCCACTGTCAGCAAGCAATGTGGTTGTGGTGCGGAGACGCGGTCGGTGCTGTGCAGCAGCAAGATGGCGCAGCTGTGCGGGCGCGAGTGCCGCCGCAAGCTGCCCTGCGGCGTGCACCAATGCCAGCAAGAGTGCCACGAGGGACCCTGCGATGAATGCTCAGAAATAGTCACACAAATGTGCTACTGCCCCGCGGCAAAGACACGGTCTGTGCCGTGCACTTCAGACACTAGCGAGTGTCGCGCATGGTCGTGCGGCGCGGAGTGCGCGCGCGTGCTGTCGTGCGGCGCGCATGTCTGCCGGCGCGTGTGTCACGCCCCGCCCTGCGCGCCCTGCCCCCTGCGCCCCGACAACGTGCACTCCTGCCCCTGCGGCAACACtaaGATTGAAAAAGATGAACGAAAGTCCTGCACAGATCCGATTCCTTTATGCGGTAACATCTGTGCGAAGCCATTATCCTGTGGTCCGGAAGgagacaaacatttttgtaaacaattgtGTCATGaagGACCGTGTCCGACGTGTCCCGATAAGACATTGTTGCCGTGCCGCTGCGGGCACTCGAGCCGCGAGGTGCCTTGCTCAGACTTGCCCGAAATGCTCAACAATATTTTCTGtcagaaaaaatgtaataagaagTTATCGTGCGGTCGTCACCGCTGCCGCACGGCGTGCTGCGCGGCCCAGTCGCACCGCTGCGCAGTGGTGTGCGGCCGCACGCTGTCCTGCCAGCTACACCGCTGCGAGGAGTTCTGTCATACGGGACACTGTGCGCCTTGCCCCCGCGTCAGTTTCGAGGAGTTGCACTGCGAGTGCGGCGCGGAGGTGGTGTTGCCGCCGGTGCGGTGCGGTACGCGGCCGCCGGTGTGCCACGCGGCGTGCGTGCGCGTGCGCCCTTGCCGCCACCCGCCGCACCACGCCTGCCACACCGGCGACTGCCCACCCTGCGTCGTGCTCACCACCAAGATGTGCCACGGACAACATGAGGAGCGGAAGACAATACCGTGCAGCCAGGAGGAGTTCTCGTGCGGTCTGCCGTGCGGCAAGCNNN
Protein Sequence: MSQWNNSYGYNNQFQVPPNSWNGDLNGQYVNQPYYDNRQYESSNQYVSFDEFLTQMQGNGVPQNNASNYNNVQYQAYPTNQYNYQNVPSQNPQMEYNYGHQNPTASNTLDTYSTNIQNQYNQSVPESNTFSNEVVMNSKLTPTATEFVPKCSINVASTSQTTSQETSVTHNDEPDNRSSTTKSSESNWRERPSNSETGNSQVEMNNFGRYQKNYKNTEGNRNRESNSRYEKRNNESKHESNGRYRNEHSNNYQSNQQNKESSIQNKDSENSANDNYNHQNENQRNFETGNRNETRRYANENNQSKANSKSKNKDSDAGRTFYNSSINKNSQDVRNGRGESSGRNRNWIGSQRVRTAERNNIEDEQYANTYMHYKDDRAERVANNNKHEKTASPVKGKNKPTNDSGGNTAMTQRERLTEQLDKGTLECLVCCERVKQTDSVWWCSNCYHVLHLRCIRKWAMSSLVEGKWRCPACQNTNEDIPTEYRCMCGAVKSPEYSRGSVSAHTCGKSCRRPRNCPHPCTLLCHPGPCPPCQATVSKQCGCGAETRSVLCSSKMAQLCGRECRRKLPCGVHQCQQECHEGPCDECSEIVTQMCYCPAAKTRSVPCTSDTSECRAWSCGAECARVLSCGAHVCRRVCHAPPCAPCPLRPDNVHSCPCGNTKIEKDERKSCTDPIPLCGNICAKPLSCGPEGDKHFCKQLCHEGPCPTCPDKTLLPCRCGHSSREVPCSDLPEMLNNIFCQKKCNKKLSCGRHRCRTACCAAQSHRCAVVCGRTLSCQLHRCEEFCHTGHCAPCPRVSFEELHCECGAEVVLPPVRCGTRPPVCHAACVRVRPCRHPPHHACHTGDCPPCVVLTTKMCHGQHEERKTIPCSQEEFSCGLPCGKX

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01140620;
90% Identity: -
80% Identity: -