Basic Information

Insect: Papilio polytes
Gene Symbol: RREB1
Assembly: GCA_000836215.1
Location: NW:400386-423980[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.025 1.3 9.1 0.3 1 23 93 116 93 116 0.96

2 12 5.2 2.7e+02 1.8 1.3 2 22 159 179 158 179 0.91

3 12 0.014 0.74 9.8 0.1 1 23 306 328 306 328 0.97

4 12 0.00077 0.04 13.8 0.4 1 23 337 359 337 359 0.99

5 12 0.00047 0.025 14.5 2.0 1 23 365 388 365 388 0.97

6 12 0.0019 0.099 12.6 1.6 1 23 738 761 738 761 0.96

7 12 0.00016 0.0083 16.0 1.3 2 23 954 975 953 975 0.97

8 12 0.016 0.85 9.7 5.3 1 23 981 1004 981 1004 0.97

9 12 0.14 7.2 6.7 1.4 1 23 1035 1059 1035 1059 0.90

10 12 0.077 4 7.6 0.1 1 23 1083 1106 1083 1106 0.91

11 12 0.015 0.76 9.8 0.3 2 23 1146 1167 1145 1167 0.92

12 12 0.018 0.94 9.5 5.3 1 23 1173 1195 1173 1195 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.025	1.3	9.1	0.3	1	23	93	116	93	116	0.96
2	12	5.2	2.7e+02	1.8	1.3	2	22	159	179	158	179	0.91
3	12	0.014	0.74	9.8	0.1	1	23	306	328	306	328	0.97
4	12	0.00077	0.04	13.8	0.4	1	23	337	359	337	359	0.99
5	12	0.00047	0.025	14.5	2.0	1	23	365	388	365	388	0.97
6	12	0.0019	0.099	12.6	1.6	1	23	738	761	738	761	0.96
7	12	0.00016	0.0083	16.0	1.3	2	23	954	975	953	975	0.97
8	12	0.016	0.85	9.7	5.3	1	23	981	1004	981	1004	0.97
9	12	0.14	7.2	6.7	1.4	1	23	1035	1059	1035	1059	0.90
10	12	0.077	4	7.6	0.1	1	23	1083	1106	1083	1106	0.91
11	12	0.015	0.76	9.8	0.3	2	23	1146	1167	1145	1167	0.92
12	12	0.018	0.94	9.5	5.3	1	23	1173	1195	1173	1195	0.97

Sequence Information

Coding Sequence: ATGCAGGGTGCTGCCAACGcgcccgcgccccccgcgGCCGAGCCGCCTGCCAACCAGCAAATCAAAACAGAAGTCATTAGTGAGGCTAAAGTCGAGACAGAAGAACTACAAATCGACAAAATGAAGTTGGAGAGCGAACCGCGCGCGACACGCACCACCAGCATTGACAGCGATAATAGATCTGATCGCAGCGAAGAAGAAGATTCTAGAAGGTGCAGGAAAAGAGCAGCGTCCACATCTCCATCGCCAATACCCTTGGATAAAAGAACAACGCGATACGAGTGCCCAAAGTGTCTACAGCGGTTTGACTCCGCCAACGCTTTCGACATACATCGTTTCACAGCTCACGGTGATGAAGTTAGAACAGGCTATGATGATATAAGTTTAGTTGACTTCTCAAACAAGAAATTCCCGGAAATATCACGAGGAATGTGCGAGCGTAACACTCATATACCAATGCATGAGCAACGCAACAAATGCGAGTTGTGCTCGCGGGAGTTCCCATGTAGCCAGTCTTTGGACATTCATAGAAAAACTTGTACCAATTCAACCAGACTTACTAGTCCAGAACGTGAACGTCGAGATTTCTTCGCTAACTTAGACCTTAGGAATAGGTCTTTTGGTATTCCTGGCACTTTAACACCGCCCATGGAGAGATTCACTTCAAAATTCGAGGACGGCCATATTGTTGGAAACGGCATAAGGCATATAGATGCTGCTAGAGACTTGGCAGATATTCAATCGATCTTAAATGTGACGTCTGCTGGGAGTCTCCTAGAAAGGCTGACTGGTACTAGAGTTGCTTTAGAAAGCGCTGCCCTCACTCCACCTGATACAATAGTGAAGGAACGCGAACAAGAAGAAACTCAAGATAATTTTGCAGCTGAATTCAGAAGAATGAAGCTTCGTGGCGAATTCCCCTGCAGATTATGTCCAGCGAAGTTTCCCAATCTTCGAGCACTTAAAGGACATAACAGAGTACATCTCAGCGGAACAGGTCCCGGGCCTTACCAGTGCAACATGTGTCCTCATGCATCTTTAGACAAGGCTGCTTTGGTTCGTCACATGAGGACTCATAATGGAGATCGTCCTTACGAATGCGCCGTGTGCAATTATGCGTTTACTACTAAAGCTAATTGTGAGCGCCATTTACGTAATCGCCACGCCAAAGTTACCAGGGAAGACGTTAAGCGCTCTATTATTTACCATCCATCTGAAGATCCAAACAACGATGAAGTGAATTCGAAGTTGGCTAGAGATGAAGTCAAAAGGTCTCTCGCTTTTCATACACCTGAAATTGAGCGGCGCAACGAATCAACTGGTCGCGATACGCCGTTGACGCACTATACGCCAACATTTATAACAGACAGACATCCAGTTACCGCTTTAACTACCAAAGCTTTACCAGAAACACCAACATTGACTCCTAAAGAACCAGAGCAGTCTCTTCCTAGAATCAAAGTGAAAGGAATCGGACAGTTGACACAAATACCAGAATTCAGACCACCAGAGCTGACATTTAATTCTAACGACACTCCGCCTGAACCTTACGATGATGATGCTCCCGTCGATCTTAGCACAAGCGATAATAACAGCTGCGATGTTCTGGATCTCAGTAAAAAGAAACGCGAAGTGGATGATGAACCCAAAGCGGTCCCACGAAACGCCTTTGAGACAAACCCGTCCACAACCGCAGCATCAGTAGCTGCCACGGCATTGGAAAAAACGAGATTCCTCTTAGCCCAGCAAAGACTTTTCGAGTCTTCTCTACCAAAGATTGACCCATATTATGCAAATCAGTTTTCCCAGCTATACGCCGGCGCTGTCTCCGGCCTACCGGGCTTGACAATCCCACCTTCAGCCTTTCCTATCAATCCTTACTTTCTTCAGACATCGTTTTTTCCTCACCCAACTGATTCACAAGAACTTGCCGAAATAAAACAGCGTATACAAAAGGAAATTATTCGTGGGCTTAGTATGTCGGGGGGACGATTGGTTACCGAACCTGAGACTCAGCCGAAGCAAGAGCCTGAAGAAGAAGACCTGAAACCGCTCTCTCAAGCTACCTCCCCCACCCCACCACCTCGTCCTGAATCTCCGCGCCCTTTAAGCAACAATGTTGTATCTCAAAGCGATTCCGTAAAGATGGTTATTAAGAACGGTATACTGATGCCAAAGCAGAAGCAAAGACGTTATCGCACTGAAAGGCCATTCTCATGTTCGCAATGTTCAGCTCGGTTCACTTTACGTTCAAACATGGAACGTCACGTGAAGCAACAACATCCCCAGCATTGGAGCGTACGTAGACCGACGCCAAGAGCCCCGCCGCCGTATCCGACGCCAGATAACATAGCTGACAGAGTGAAATTCGCGCTTTTAGCCAGACATTTAGAAAGGCCGCTGCAACAAAACGATCGTTCCCCCATTCGCAGAGACTCTGACGAGGTGGCTGATAATGAAGAGGACGAAGATGACACTTTAATCATTGATGAGGAACCAGAAAATGATATCAAACCCCTAGATCACACTGCAGCACATAAAGCAGCGGCAGAAATACTTATGGCTACCCGTCAACAAGAAATGGCTAAAGACTTCGATCTTAAAATAGCAGGAAATCTAATTAACAAACCGATCCCAATCGCTACTGATAAATCTGAAACTGGAACAGATCCTATCCAAGATTCGGAATCCATTCCTGTTGTTCCCACTCGTAGCGATGAGGAGGAAGATGAAGAAGGCCTGGTTGCATCAACTAGCGAAGGCAATAATTCTGGAAGCGACGAAAACAAatcGGAATCAGACACCGGAACTCTTCCTCCTAAGAAGAAGTCGGCATATAGTCTAGCTCCAAACCGAGTGTCATGTCCGTACTGCCACCGCAAGTTCCCCTGGTCGTCGTCCCTCCGTCGCCACGTGCTCACCCACACGGGACAGAAACCCTTTAAATGCCCTCACTGTCCTTTACTCTTCACCACGAAGTCAAACTGCGATCGTCATTTGCTTCGAAAACACGGCGGATCCGCTAGAGCTATACTCGCTGAACCAATCACAGACTCGGTCTCCCCTCCACAGATTGACACCAGAACAGTCCCAGAAAGACCATTCAAATGCGCGTCGTGTCCAACCAGTACTTTTTCCTCTATGGAAACTTTAAAGAAACATATGTCATCTCGTCACGGAACTAGCGATTCCCAACCGGGTTCTCCTAACCCAGAAGGGAATGAGGAATTAGTGGACGGTATGGTGTTCAAGTGTCATTTATGTGAAGGGTCCTTTGGAGATAGAAGTGCAGCTTTAGCTCATTTAGCAGCTAATCATGCAGCGGAATATGAACAGTTGGTTAGCAAAGGAGCGCTAGATGGCACCAGTGACCGTAGCGAGAGCGCTGATGATGACGAAAGGGGCAAATTTCCTGATCACGCTAATAGAAAGGTTGTGTGTGCGTTTTGCATCCGTCGTTTCTGGTCGGCTGAGGATTTGCGGCGTCACATGCGTACTCACTCCGGTGAGCGGCCATTCGCATGCGACTTGTGTCGGCGGCGGTTCACACTGAAGCACAGCATGCTAAGACACCGCAAGAAGCACCGAGAAGAACTCACTGATGATGAGGAAACCACGCCTCCAAACACACCATTGGAAACAGCTAATACTAATGGATATCGCTACCAAGACGACGAAGGTTCAGGCGGGGAAGTGCCCAGTAACGTGAACAACAACAACTCACCGCCATCTATCCCCTACGACAAGAAACTCAAACTGCAAATGACGTCACGCAAGTACTCATCTGACGCTGAGAACGATCCAGAAAATGGCGGCGATCTGATCGGAAAACTGCTCGGGATACAGGACAAGACTATTATCAACAAACTTCTCTCCTCAGCGGATGAAGCGGCCAAATTCCTTGGAGTTAATAAATGA
Protein Sequence: MQGAANAPAPPAAEPPANQQIKTEVISEAKVETEELQIDKMKLESEPRATRTTSIDSDNRSDRSEEEDSRRCRKRAASTSPSPIPLDKRTTRYECPKCLQRFDSANAFDIHRFTAHGDEVRTGYDDISLVDFSNKKFPEISRGMCERNTHIPMHEQRNKCELCSREFPCSQSLDIHRKTCTNSTRLTSPERERRDFFANLDLRNRSFGIPGTLTPPMERFTSKFEDGHIVGNGIRHIDAARDLADIQSILNVTSAGSLLERLTGTRVALESAALTPPDTIVKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPEIERRNESTGRDTPLTHYTPTFITDRHPVTALTTKALPETPTLTPKEPEQSLPRIKVKGIGQLTQIPEFRPPELTFNSNDTPPEPYDDDAPVDLSTSDNNSCDVLDLSKKKREVDDEPKAVPRNAFETNPSTTAASVAATALEKTRFLLAQQRLFESSLPKIDPYYANQFSQLYAGAVSGLPGLTIPPSAFPINPYFLQTSFFPHPTDSQELAEIKQRIQKEIIRGLSMSGGRLVTEPETQPKQEPEEEDLKPLSQATSPTPPPRPESPRPLSNNVVSQSDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPTPRAPPPYPTPDNIADRVKFALLARHLERPLQQNDRSPIRRDSDEVADNEEDEDDTLIIDEEPENDIKPLDHTAAHKAAAEILMATRQQEMAKDFDLKIAGNLINKPIPIATDKSETGTDPIQDSESIPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGTLPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPITDSVSPPQIDTRTVPERPFKCASCPTSTFSSMETLKKHMSSRHGTSDSQPGSPNPEGNEELVDGMVFKCHLCEGSFGDRSAALAHLAANHAAEYEQLVSKGALDGTSDRSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREELTDDEETTPPNTPLETANTNGYRYQDDEGSGGEVPSNVNNNNSPPSIPYDKKLKLQMTSRKYSSDAENDPENGGDLIGKLLGIQDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_01149107;
80% Identity: -