Basic Information

Insect: Papilio polytes
Gene Symbol: -
Assembly: GCA_000836215.1
Location: NW:417927-422424[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00063 0.033 14.1 1.7 1 23 235 257 235 257 0.98

2 10 0.13 6.5 6.9 0.2 3 23 282 303 280 303 0.94

3 10 0.00023 0.012 15.5 0.7 2 23 325 346 324 346 0.95

4 10 0.00015 0.0075 16.1 0.5 1 23 350 372 350 372 0.98

5 10 0.0027 0.14 12.1 0.3 1 23 379 402 379 402 0.95

6 10 5.3 2.8e+02 1.8 0.4 3 23 410 431 408 431 0.83

7 10 2.9e-05 0.0015 18.3 1.2 1 23 437 460 437 460 0.97

8 10 8.9e-05 0.0046 16.8 1.4 1 23 466 488 466 488 0.98

9 10 7.7e-06 0.0004 20.1 0.9 1 23 494 516 494 516 0.99

10 10 2.6e-06 0.00014 21.6 3.2 1 23 522 544 522 545 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00063	0.033	14.1	1.7	1	23	235	257	235	257	0.98
2	10	0.13	6.5	6.9	0.2	3	23	282	303	280	303	0.94
3	10	0.00023	0.012	15.5	0.7	2	23	325	346	324	346	0.95
4	10	0.00015	0.0075	16.1	0.5	1	23	350	372	350	372	0.98
5	10	0.0027	0.14	12.1	0.3	1	23	379	402	379	402	0.95
6	10	5.3	2.8e+02	1.8	0.4	3	23	410	431	408	431	0.83
7	10	2.9e-05	0.0015	18.3	1.2	1	23	437	460	437	460	0.97
8	10	8.9e-05	0.0046	16.8	1.4	1	23	466	488	466	488	0.98
9	10	7.7e-06	0.0004	20.1	0.9	1	23	494	516	494	516	0.99
10	10	2.6e-06	0.00014	21.6	3.2	1	23	522	544	522	545	0.96

Sequence Information

Coding Sequence: atgGCAGTAACGATCAATACTAAGAATAAAAAAGGACCGATTATCGATCCAGCATTATGTCGATGTTGtcgttcaataaaaaaatgccgAATCCTGTCGGCGGAATACGAATGGATGGGAAATAAAGAAGTGTATTCAGATATGCTTATGGATTGCTTTGGATTACTtCTGTCACACCTAGATGGTGATAATAAGGAGATCGGAATCTGTGCAACCTGTGTGTGCAGGTTACGTGAAGCATGTGCCTTTAGGCGGCAAGTTCTGCAGTCAGAAGAGGTGTTTATGAAGGCCAAGCTTGAGGGAAATAAAGATGattcACAATACCCAATGGAGTTTAAAACCGAACCATTAGAAATAATGGAGGCTGATAGTCAAATGGATGAGGCAGAGGATGTTGACCAAgATGAAAAACCATTAGTAAATCTAATCAAGGCGAAGAAAGCGACCGTTACAGTTGCAAGACGCAGATCTGTTCGTACAACACATGTAAAGTCTGATACAATGAAAAGTGAGGTTAACAGTTTAAGCAGAAAGAGAGTTAATATGGATGATTTACAAGATGATACAGaAATACaggaaagaaataaattaataccaGGGAAGatgaaaaaaacctttaacCGTGAAGAAATGGCTTATACTAACACAGTGACTATAGTTCATAATTCTTATGTCTGTCCGTTCCACAACAAagttagtaattattattgttattattgcaAGGACCAATTTACAAATCCCAATGAATTACGCGAACACACAATGACACACGAACCAAAAACAATGTTCGAAAGCATGATGGAACATAAAAAGATACCGAAAATCGATATTACAAGaatcgattgtcgattatgtCAAGAAAAAATCGATAATCTGgaaacgttaaaaaaacacCTCACTATTATCCATGGTTTGAAGTTGCATCCAATCACaaatgagtttttaaaattccgtttgacgttaaataatttaacttgcACAGAATGTAAAAGCAGTTTTCCATATTTTGATTCGTTAAAGAAACACATGGCTGAACATTTTggtaaatttatttgtgatattTGCGGTGCTTGTTTTCTAGAACAGGCTTCTTTAAGAACACATATAAAGACTCATTATAAAATAGACATGTGCTTTCCTTGTGAGATTTGCGGTAAGAAtcttaaatctaaatatagCAGATATCTACATGTAGCGACAGTACATGAGAAAAAACCAACAGTTAATTGCTACAAATGTGACGCGGCTTTTCTTTCACATgcattaagaaataaacatttaattgaaGTACACGGTGataagagaacatttcccTGCAAATTATGTGACAAAGTATACAATAGAAGGAAAACATTAATGGAACATAATCgaagaatacatttaaaagtgtatAGACATCAATGTGATTTGTGTGACCAGAGATTTTATTTACCATCGAGATTGAAAGAGCATATGGCAACACACACCGGAGAGAGGAATTTTCGTTGTGAATTCTGTGACAAAGGTTACCCAAGATTAAAATCGTTGCAGGAACATTTGCGTTCGCATACTAATGATAGACGGTACAAATGTGATATATGCAATTCAACTTTCACACAAAATGCCAGCCTTAAAAATCATTTGAAGAGTCACCATCAAGGATATGAAATGGAAtccagttttaattaa
Protein Sequence: MAVTINTKNKKGPIIDPALCRCCRSIKKCRILSAEYEWMGNKEVYSDMLMDCFGLLLSHLDGDNKEIGICATCVCRLREACAFRRQVLQSEEVFMKAKLEGNKDDSQYPMEFKTEPLEIMEADSQMDEAEDVDQDEKPLVNLIKAKKATVTVARRRSVRTTHVKSDTMKSEVNSLSRKRVNMDDLQDDTEIQERNKLIPGKMKKTFNREEMAYTNTVTIVHNSYVCPFHNKVSNYYCYYCKDQFTNPNELREHTMTHEPKTMFESMMEHKKIPKIDITRIDCRLCQEKIDNLETLKKHLTIIHGLKLHPITNEFLKFRLTLNNLTCTECKSSFPYFDSLKKHMAEHFGKFICDICGACFLEQASLRTHIKTHYKIDMCFPCEICGKNLKSKYSRYLHVATVHEKKPTVNCYKCDAAFLSHALRNKHLIEVHGDKRTFPCKLCDKVYNRRKTLMEHNRRIHLKVYRHQCDLCDQRFYLPSRLKEHMATHTGERNFRCEFCDKGYPRLKSLQEHLRSHTNDRRYKCDICNSTFTQNASLKNHLKSHHQGYEMESSFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01144020;
90% Identity: iTF_01145454;
80% Identity: -