Ppol006542.1
Basic Information
- Insect
- Papilio polytes
- Gene Symbol
- -
- Assembly
- GCA_000836215.1
- Location
- NW:502074-505232[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.3e-07 2.2e-05 24.1 2.1 1 23 8 31 8 31 0.95 2 20 0.002 0.11 12.5 0.5 2 23 37 59 36 59 0.93 3 20 1.4e-06 7e-05 22.5 0.3 2 23 68 90 68 90 0.97 4 20 2.2e-05 0.0011 18.7 4.0 2 23 99 121 98 121 0.94 5 20 8.9e-06 0.00046 19.9 0.4 3 23 130 151 129 151 0.95 6 20 1.8e-06 9.5e-05 22.1 1.5 2 23 160 182 159 182 0.96 7 20 0.0013 0.067 13.1 3.5 1 23 188 211 188 212 0.95 8 20 0.0021 0.11 12.5 2.2 1 23 257 280 257 280 0.94 9 20 0.051 2.6 8.1 1.4 1 23 304 327 304 327 0.93 10 20 0.005 0.26 11.3 0.7 3 21 336 354 334 355 0.94 11 20 0.019 1 9.4 0.4 2 23 364 386 364 386 0.93 12 20 3.1e-05 0.0016 18.2 7.3 1 23 401 424 401 424 0.97 13 20 3.4e-05 0.0018 18.1 5.0 1 23 429 452 429 452 0.96 14 20 0.00071 0.037 14.0 2.0 2 23 458 480 457 480 0.94 15 20 0.013 0.7 9.9 3.1 1 23 486 509 486 509 0.95 16 20 0.21 11 6.2 4.4 2 23 517 539 517 539 0.95 17 20 0.00013 0.0068 16.3 0.3 1 23 546 569 546 569 0.96 18 20 0.074 3.9 7.6 2.6 1 23 576 598 576 599 0.95 19 20 0.0016 0.082 12.8 2.3 2 23 613 635 613 635 0.96 20 20 1.2 60 3.8 0.2 1 11 685 695 685 698 0.88
Sequence Information
- Coding Sequence
- ATGTCACAGAACCCTTCACAATATGTATGCGATTACTGCAGTCGAACTTTTACTCGTAAGTACAACTTGCAAACACATATCGAGAACTATCATATGAATTCGTCATGTTATTGCGAAATCTGCGACCAAAGATTCGGGAGCCCCGCCGGCCTTCAATTACACTTCTCACGAGGTCACAATAGATTTGGTCAAGCATTCCCCGAATGCGATATATGTGGTCGCGTCTTCACAAGAAAGCAGAATATAACATCCCACATGATTACAGTACATTTACACAGTGGACGACCAGGTATCAGATGTCACTTATGTGAGAAAACATTCACAACAGAGAGGAATTTGAAAAGACACAAAAATCAATTACACAACCCCGATTTTGAATATCCAATTTGTGATATGTGTAAgaaagtatttaaaagtaaatctgCACTGATAACACATATTGATTCGACACACCAgcatataaataaagattcttTGAAATGTCAACTCTGTAACAAAGTTTATACTAACAACAGAAACCTTAAAAGGCATATCGAAATGTTTCACGGCGAAAAAGGGGAATTCAAATGCATACAATGTCCCAAAGTGTACACATCTAATCAGAGTTTGAGACGTCACAACAAAACTATGCATCATCCTGAATCAATGCAATATTATTGTCAAATTTGCTGTAAAGAAATCCACGGGAAGGAAAACATTGACGAACATATAAGTTCATGCACTCAAGAAGTTCCCGATAGCAATGAAATTGATGTAACATCATTGGTTTATAACTGCAATAATTGTGATAAATCATTCAATCAAGAACCATTATTACGATGTCATGTAAAATCGGAACATACTTTTCaagatttttacaattattgtaaacaatcCCTATTAGAAACAACccaaattcaaacaaaagaatatataTGTGAATTCTGCAGTACTAAACTCAATAATTTACATGAATTGAAAGACCATTTACTGTTTatacatgaaaaatattataatttatccaATTGTAATGTCTGCTTCACGAAGTTCACAACAAACGAAACATTAATAGAACATAGAAAGTTCTGTTTACCACCTCCGGATGTTAATTCCTGTGAATACTGCGATAGACTTTTCACAGATATCTCTAGTTTAGAGTTCCATGTGAAAATATTCCATCCACAAGCACAATCATCGAGTAATGAAGAGACAGAACAGAGttacaaatgtcaacattGTGATCGAGTTTATTACAATCAGAAATCTCTAAAACatcacatgaaattaaaacataaagaaCAAAGTTTCAATTGTCATTACTGTGGCaaagtttgtaataacaaatattaccTATCCACACATATTAAAGAGGTGCATGGTAATATATGTTCGAAGTGTAGTTATTGTGATAAATGGTTCAAATCCAAGAGGAATATACGTCGACATATAGAATACACACATCTTGGTATGCAACGACACAAATGTATTGAATGTGACACTTtatttaaagagaaaagaagTCTAAGAAAACATGTAAGAATCAAACATCCACATTCAAATTTATTCCCACAATGTCATATTTGTTATCGTAGATTTGAATCGGCAAAATCTTGTAAagtacatttgaaattaatccattctttaaatatatcaacaCATCCGTGTGGTTTTTGTCCGATATCTTTCAATTCTTTAGATGCGTTAAAAGaacatttacaaacaaacCATTTAGCGGAAGATGAAATTTACAAATGCGatgaatgtaatttattattcaaaggTCAGAATAAATTTGATCAACACAAAGAGATACATCATTCCAATCTATTATGGAATGGAAAACGTAAATCTGTACCTCGCTGTGTTATTTGTATCAAAGATTTCAGTTCgagaaaaacattaaaacgtCACATAAAGAAGTTTCATGACGAATTTAATGTAGACGATTTGGCGAACTATTCATggcttgttaaaataacaagcGTTAATTGTGATGAGTGTATAAAAACGTTCACAGATgagttaaaaaacattagttacaataaagtaaaggAATCTCTAGAATCTATTGTATATAAGTGTGATAAGTGtttaaaatcatataataTGCTAGaatattcagttttaaaacataaattaaataatacgtaTAGAAGTAAGATGATTTTAAGTGAATTTTGTACAGCGGAGTTAAGTGAAGGTGACGATGATTTGAATTTGTCACATATGGAACCGGAAAGCACAACTGACTGA
- Protein Sequence
- MSQNPSQYVCDYCSRTFTRKYNLQTHIENYHMNSSCYCEICDQRFGSPAGLQLHFSRGHNRFGQAFPECDICGRVFTRKQNITSHMITVHLHSGRPGIRCHLCEKTFTTERNLKRHKNQLHNPDFEYPICDMCKKVFKSKSALITHIDSTHQHINKDSLKCQLCNKVYTNNRNLKRHIEMFHGEKGEFKCIQCPKVYTSNQSLRRHNKTMHHPESMQYYCQICCKEIHGKENIDEHISSCTQEVPDSNEIDVTSLVYNCNNCDKSFNQEPLLRCHVKSEHTFQDFYNYCKQSLLETTQIQTKEYICEFCSTKLNNLHELKDHLLFIHEKYYNLSNCNVCFTKFTTNETLIEHRKFCLPPPDVNSCEYCDRLFTDISSLEFHVKIFHPQAQSSSNEETEQSYKCQHCDRVYYNQKSLKHHMKLKHKEQSFNCHYCGKVCNNKYYLSTHIKEVHGNICSKCSYCDKWFKSKRNIRRHIEYTHLGMQRHKCIECDTLFKEKRSLRKHVRIKHPHSNLFPQCHICYRRFESAKSCKVHLKLIHSLNISTHPCGFCPISFNSLDALKEHLQTNHLAEDEIYKCDECNLLFKGQNKFDQHKEIHHSNLLWNGKRKSVPRCVICIKDFSSRKTLKRHIKKFHDEFNVDDLANYSWLVKITSVNCDECIKTFTDELKNISYNKVKESLESIVYKCDKCLKSYNMLEYSVLKHKLNNTYRSKMILSEFCTAELSEGDDDLNLSHMEPESTTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01144707;
- 90% Identity
- iTF_01143996;
- 80% Identity
- -