Phel065739.1
Basic Information
- Insect
- Papilio helenus
- Gene Symbol
- -
- Assembly
- GCA_026546675.1
- Location
- JAOCNA010000022.1:343517-345754[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.6e-07 8.1e-05 24.1 2.1 1 23 8 31 8 31 0.95 2 19 0.00054 0.095 14.4 0.3 2 23 37 59 36 59 0.94 3 19 1.4e-06 0.00025 22.5 0.3 2 23 68 90 68 90 0.97 4 19 1.9e-05 0.0035 18.9 2.2 2 23 99 121 98 121 0.94 5 19 1.1e-05 0.002 19.7 1.3 3 23 130 151 129 152 0.95 6 19 1.2e-06 0.00022 22.7 1.2 2 23 160 182 159 182 0.96 7 19 0.00042 0.075 14.7 2.8 1 23 188 211 188 212 0.95 8 19 0.009 1.6 10.6 1.6 1 23 256 279 256 279 0.94 9 19 0.076 14 7.6 2.4 1 23 303 326 303 326 0.92 10 19 0.0035 0.63 11.8 1.2 3 21 335 353 333 354 0.94 11 19 0.21 38 6.2 0.2 3 23 364 385 363 385 0.92 12 19 0.00019 0.034 15.8 6.0 1 23 401 424 401 424 0.97 13 19 3.2e-05 0.0058 18.2 6.2 1 23 429 452 429 452 0.97 14 19 0.0021 0.37 12.6 1.6 2 23 459 481 458 481 0.94 15 19 0.014 2.5 9.9 3.1 1 23 487 510 487 510 0.95 16 19 0.22 40 6.2 4.4 2 23 518 540 518 540 0.95 17 19 0.00042 0.075 14.7 0.3 1 23 547 570 547 570 0.96 18 19 0.079 14 7.6 2.6 1 23 577 599 577 600 0.95 19 19 0.0017 0.3 12.8 2.3 2 23 614 636 614 636 0.96
Sequence Information
- Coding Sequence
- ATGTCACAAAATCCTTCACAATATGTGTGCGATTACTGCAGTCGAACTTTTACTCGTAAGTACAATTTGCAAACGCATATTGAGAACTATCATATGAATTCGTCATGTTATTGCGAAATCTGCGACCAAAGATTCGGGAGCCCCGGCGGCCTACAATTACATCTCACACGAGGTCACAATAGATTTGGTCAAGCGTTCCCTGAATGCGATATATGTGGTCGCGTGTTCACGAGAAAGCAGAACATAACATCCCATATGATTACAGTACATATACAAAGTGGACGTCCTGATATCAGATGTCAGTTATGCGAAAAGACATTTACAACAGAAAGAAATTTAAAAAGACACAAAAATCAATTACACAACCCTGATTTAGAATATCCGATTTGCGATATGTGTAAGAAAGTATTTAAAAGTAAATCAGCATTAATAACGCATATAGAATCAACACACCATCATATAAATAAAGATTCCTTAAAATGTGAACTTTGTAATAAAGTTTATACTAACAACAGAAACCTTAAAAGGCATATCGAAATGTTTCACGGTGAAAAAGGTGAATTTAAATGCATCATATGTCCTAAAGTGTACACTTCTAATCAAAGTTTGAGACGTCACAACAAAACTATGCATCATCCGGAATCTGTTCAATATTATTGTCAAATTTGCTGTAAAGAAATCCACGGGCAGGAAAATATTGACGAACATATAAGTTCTTGCACTCAAGATGTTCCTGAAACCAACGAAGTAACAACAGAATTAATGTATAATTGTAATAAATGCGATATATCATTCAATCAAGAACCACTATTACGATGTCATGTGAAATCAGAACATACTTTTCAAGATTTTTACAATTATTGTAAACAATCACTATTAGAAACAACACAAATACAAACAAAGGAACATATATGTGAATTCTGTAATACTAAAGTCAATAATTTACACGAATTGAAAGATCACTTACTATTTATACATGAAAAATATTACAATCTATCAAACTGTAATGTTTGTTTTACAAAGTTTACAACAAACGAAACATTACAAGATCATAGAAAGTTCTGTTTACCACCTCCTGATGTTAATCCCTGTGAACAATGTGATAGACTTTTCACAGATATAACGAGTTTAGAGTTCCATGTGAAAATATTTCACCCACAAGCACAATCATCGAGTAGTAATGAAGACACAGAACAGGGTTACAAATGTCAGCATTGCGATCTAGTGTATTACAATAGCAAATCACTAAAACATCATATCAAATTGAAACACAAAGAACAAAGTTTCAATTGTCATTACTGCGGGAAAGTTTGCAATAATAAATACTATCTTTCAACACATATTAAAATGACACATACTAATATATCATGTTCCAAGTGTGATTATTGTGAGAAGTGGTTTAAATCTAAGAGGAATATACGTCGACATATCGAGTACACACATCTCGGTATGCAACGTCATAAATGCATTGAATGTGATACTCTATTCAAAGAGAAAAGAAGTCTACGAAAACACGTAAGAATAAAACATCCACATTCAAATTTATTCCCGCAATGTCATATATGTTATAGAAGATTTGAATCAGCGAAATCTTGCAAAGTACATCTAAAATTAATCCATTCTTATAACTTAACTACACATCCGTGCGGATTTTGTCCAATATCATTCAATTCTATAGATGCGTTAAAGGAACATTTACAAACAAATCATTTAGCAGAAGATGAAATTTATAAATGTGATGAATGTAATTTGTTATTCAAAGGGCAGAATAAATTTGATCAACATAAAGAAATACATCATTCCAATCTTATATGGAATGGAAGACGTAAATCTGTACCTCGTTGTGTTATATGTATAAAGGACTTTAGTTCTAGAAAAACTTTGAAACGTCACATAAAGAAATTTCATGATGAATTTAATGTAGATGATTTAGCCAATTACTCATGGCTTGTTAAAATAACTAGTGTCGATTGTGACGAGTGTATTAAGACGTTCACAGATGAATTAAAAAATATAAATTACGATAAATTGAAGGAATCTCTAGAATCTATAGTACATAAATGTGATAAGTGTTTAAATTCATATAATATGCTGGAATATTCAGTTTTAAAACATAAATTAAATAATGCATATAGAAGTAAGATGATACTAAGTGAATTTTGTACAGCGGAGTTAAGTGAGGGTGATGATGATTTGAACTTATCACAGAACATGGAACTAGAAAACACAACTGACTGA
- Protein Sequence
- MSQNPSQYVCDYCSRTFTRKYNLQTHIENYHMNSSCYCEICDQRFGSPGGLQLHLTRGHNRFGQAFPECDICGRVFTRKQNITSHMITVHIQSGRPDIRCQLCEKTFTTERNLKRHKNQLHNPDLEYPICDMCKKVFKSKSALITHIESTHHHINKDSLKCELCNKVYTNNRNLKRHIEMFHGEKGEFKCIICPKVYTSNQSLRRHNKTMHHPESVQYYCQICCKEIHGQENIDEHISSCTQDVPETNEVTTELMYNCNKCDISFNQEPLLRCHVKSEHTFQDFYNYCKQSLLETTQIQTKEHICEFCNTKVNNLHELKDHLLFIHEKYYNLSNCNVCFTKFTTNETLQDHRKFCLPPPDVNPCEQCDRLFTDITSLEFHVKIFHPQAQSSSSNEDTEQGYKCQHCDLVYYNSKSLKHHIKLKHKEQSFNCHYCGKVCNNKYYLSTHIKMTHTNISCSKCDYCEKWFKSKRNIRRHIEYTHLGMQRHKCIECDTLFKEKRSLRKHVRIKHPHSNLFPQCHICYRRFESAKSCKVHLKLIHSYNLTTHPCGFCPISFNSIDALKEHLQTNHLAEDEIYKCDECNLLFKGQNKFDQHKEIHHSNLIWNGRRKSVPRCVICIKDFSSRKTLKRHIKKFHDEFNVDDLANYSWLVKITSVDCDECIKTFTDELKNINYDKLKESLESIVHKCDKCLNSYNMLEYSVLKHKLNNAYRSKMILSEFCTAELSEGDDDLNLSQNMELENTTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01144707;
- 90% Identity
- iTF_01147533;
- 80% Identity
- -