Basic Information

Insect: Papilio phestus
Gene Symbol: -
Assembly: GCA_018231625.1
Location: DVQH01000127.1:2281-4460[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.065 1.7e+03 0.7 0.3 9 19 57 67 52 72 0.86

2 6 0.0012 33 6.2 0.0 17 44 85 112 76 120 0.86

3 6 0.0078 2.1e+02 3.7 0.0 22 43 118 141 114 146 0.86

4 6 0.00041 11 7.7 0.0 18 44 144 170 139 179 0.83

5 6 0.0031 83 4.9 0.0 22 43 176 199 173 205 0.84

6 6 0.0023 62 5.3 0.0 22 44 206 228 201 233 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.065	1.7e+03	0.7	0.3	9	19	57	67	52	72	0.86
2	6	0.0012	33	6.2	0.0	17	44	85	112	76	120	0.86
3	6	0.0078	2.1e+02	3.7	0.0	22	43	118	141	114	146	0.86
4	6	0.00041	11	7.7	0.0	18	44	144	170	139	179	0.83
5	6	0.0031	83	4.9	0.0	22	43	176	199	173	205	0.84
6	6	0.0023	62	5.3	0.0	22	44	206	228	201	233	0.91

Sequence Information

Coding Sequence: ATGACTATATCGACTGGCGAAGACAGCAACATTTTTGTGCAACCAATTCAAACGGCGAGTCACATCGCCGGCTTTTTAGCGGCCAAGATTGAGGGTCTCGAGGGATCGACCTCTTCGCAGCTGCTAGTGCCGCAGCCAAGTTCGGTGTCGAGCCAAGCTTTGCTGCCACCACCAGGCACTGAGCTGAAGAGAGGCCGTGGTCGTCCGCGCAAAGGTGACAATGACCAGCGTAACAATGGGGGCACATCCCCAGCCAAGTCACAAAAATCGTACCCCTGTGATTGGCCTCACTGTGGGATGTGGTTTTCGCAATCCTCCAATCTCAACAAGCATTACCTGACCCACACCAATGAGAAGCCGTTTAAATGTCTTTGGCCTAActgtaataaaagttttaaacaaagttcTAATCTTAACAAGCATCGTTTTGTTCATACCGGTGAAAAACCATTTTTATGCGATCAATGTCACAAAAGGTTTTCACAATCGTCCAatctaaaaaaacacaaatttgtTCACAGTGGTGAAAAGCCGTACAAGTGCGAATATCCCGGTTGCACTCGTGTGTTCGATCAATCTTCCAATCTGAACAAGCACCATATGACTCACATAGGTGAAAAGCCGTTTGCCTGTGACCAGTGTGGGGAAAAGTTTACCCAGTCTTCAAACTTAAGCAAACACATGCGCAAGCATGGACAGTTTGTGACCATTCCTCACTCTCAACTagcaaacaacaacaatgttCCACAGACTATAGGTTTGAACCAGGATGGTTCCATTATACAATTGAATATGCTTCCACCGTCGGTGAGTTACGCAACTAATGGCACCACTGGTGGACACAGTAATCATCAGAGCAAGCTAGAGTCCGAATCGGCAGTGGTTGCCGCCACCAACGTTTTCTTCAATAACCACACCAGCAAATTGAACTTCCACACTCTTGATTCAAAGTTTGTGTCCGACATGTCACAAGTGTCCCAAAGTAGCAACTCTTCCACGTTACCACTGGTGCCCGCACACTTTCTCCAGCCAGGCATCAGTTTGGCAGCCACTTTCACAACAAGCTCAGTGCAGCAGTCCTCACCTGTAATCTCGTGTGCACCTCCAAGTTCGAGAACACCAGACCAATTTTCGGTGTCTAGTACGCCTGCGCCATCAAGTACACCAACGCCGACCAACTCGGAAAACGGTCTTGACATGGCCGATTCACCCAACGATCCAAATCGGTTCTTGTCTCTCAAACTATCGGTGCCCAACTCTGATGAGtga
Protein Sequence: MTISTGEDSNIFVQPIQTASHIAGFLAAKIEGLEGSTSSQLLVPQPSSVSSQALLPPPGTELKRGRGRPRKGDNDQRNNGGTSPAKSQKSYPCDWPHCGMWFSQSSNLNKHYLTHTNEKPFKCLWPNCNKSFKQSSNLNKHRFVHTGEKPFLCDQCHKRFSQSSNLKKHKFVHSGEKPYKCEYPGCTRVFDQSSNLNKHHMTHIGEKPFACDQCGEKFTQSSNLSKHMRKHGQFVTIPHSQLANNNNVPQTIGLNQDGSIIQLNMLPPSVSYATNGTTGGHSNHQSKLESESAVVAATNVFFNNHTSKLNFHTLDSKFVSDMSQVSQSSNSSTLPLVPAHFLQPGISLAATFTTSSVQQSSPVISCAPPSSRTPDQFSVSSTPAPSSTPTPTNSENGLDMADSPNDPNRFLSLKLSVPNSDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01146714;
90% Identity: iTF_01146714;
80% Identity: iTF_01146714;