Pphe010316.1
Basic Information
- Insect
- Papilio phestus
- Gene Symbol
- che-1
- Assembly
- GCA_018231625.1
- Location
- DVQH01002036.1:10139-10489[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0054 1.4e+02 4.2 0.1 27 44 11 28 8 32 0.90 2 4 5.8e-05 1.5 10.5 0.4 21 45 33 57 28 61 0.87 3 4 0.0009 24 6.7 0.3 21 51 61 91 57 92 0.85 4 4 4.6e-07 0.012 17.2 0.3 21 45 89 113 85 115 0.90
Sequence Information
- Coding Sequence
- AtgactttaataaatatcaaactCGACAGGTGCAATATCTGTGCGAAAGCATTCTCGCAAGCGGCCAATCTGACGGCCCACATACGAACACACAGTGGGGAAAAGCCATTTCCGTGTCCGGTGTGTCATCGGCGCTTTTCGCAGTCCTCCTCGGTCACCACTCACCTGCGGACTCACTCGGGCGAGCGTCCCTACTGTTGCAGCTACTGTCGCAAAGCCTTCTCCGACTCCTCCACTCTCACCAAGCATCTACGAATTCACTCGGGCGAAAAGCCATACCAGTGTCAAATGTGTTATCTTCGTTTTTCTCAATCCGGCAACTTGAATCGTCACATGCGCATCCATGGGTAG
- Protein Sequence
- MTLINIKLDRCNICAKAFSQAANLTAHIRTHSGEKPFPCPVCHRRFSQSSSVTTHLRTHSGERPYCCSYCRKAFSDSSTLTKHLRIHSGEKPYQCQMCYLRFSQSGNLNRHMRIHG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01146657;
- 90% Identity
- iTF_01146657;
- 80% Identity
- iTF_01146657;