Pphe017568.1
Basic Information
- Insect
- Papilio phestus
- Gene Symbol
- MBD2
- Assembly
- GCA_018231625.1
- Location
- DVQH01008971.1:2857-3666[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-20 8.6e-17 62.0 0.0 9 73 4 62 1 65 0.93 2 2 0.49 2.9e+03 -0.5 0.1 7 23 94 110 83 150 0.63
Sequence Information
- Coding Sequence
- ATGACCACCTTGGCCCTACCGCCCGGATGGCGTCGCGAGGAGGTCAAGCGAACCAACGGGCTATCGGGCAAGATTGATGTCTATTACATCTCACCCAAAGGAAGGCGAATCAAGTCAAAGATTGAACTGGCCAAGTATCTCGGGCCAAACGTCGATCTCTCCGCCTTTGACTTTCGCACGGGCAAGATTAACCCTTTGCTGTACCGCAAGGACAACAAGCCTACTAGTGGACTGGGCGATTTGAAAAGTCTCAAATATGACACCTCACTAACGTCACCGGCCAGACAGGTGTTGCCACTTGGCAAAAAACGTGTGGTGCTGGTTAAATCCCAGCCCGACTCGGTGGTCTACGGTCCCGAGAGACTCAAGGAGTTACGTAAAAAGTTTCCCACTCTGAACGAGAACGCCGAGAAGCCGTACCAGTTGTTCTGGCAGAAGCGACTGGAGGGTGTGCGACCACACTACCTGGAGCAATCCGAGTCGGATCTCGGTGACATGTTTGAGTTGCCCACCGAGATGCGAGCCTTCAGTGCGTTGCTTTCCCAGAAGGACACCTTGATGCGCAGTGTTGCGGCCGCACTGCAGCTCAACTCGAACCACGCGGTTCGGGGCCAGGAGAAGAATGTGTTGGCACGAGGCCGGAAAGATCCGTTCCTCGATGAGAACTGCCAACGCAACCCGGTGGCCTTTGTCAACCCGAACCAACCACTGATCCAGCCGATCACGATCAGTGAGGAGGACATCCGCCGGCAGGAGGAGGTGGTGCGCAAAGCAAGGCTCAACCTTCAAGCCGCCATCGCTGATCTCTAA
- Protein Sequence
- MTTLALPPGWRREEVKRTNGLSGKIDVYYISPKGRRIKSKIELAKYLGPNVDLSAFDFRTGKINPLLYRKDNKPTSGLGDLKSLKYDTSLTSPARQVLPLGKKRVVLVKSQPDSVVYGPERLKELRKKFPTLNENAEKPYQLFWQKRLEGVRPHYLEQSESDLGDMFELPTEMRAFSALLSQKDTLMRSVAAALQLNSNHAVRGQEKNVLARGRKDPFLDENCQRNPVAFVNPNQPLIQPITISEEDIRRQEEVVRKARLNLQAAIADL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -