Pmem009376.1
Basic Information
- Insect
- Papilio memnon
- Gene Symbol
- -
- Assembly
- GCA_003118335.3
- Location
- JAOPJP010000027.1:2722001-2730458[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.026 2.3 9.2 1.3 2 23 209 231 208 231 0.92 2 23 0.21 18 6.3 0.3 1 22 632 653 632 653 0.95 3 23 4.2 3.6e+02 2.3 0.3 1 22 695 716 695 718 0.82 4 23 0.0041 0.35 11.8 0.6 2 21 728 747 727 748 0.94 5 23 0.42 36 5.4 0.3 2 23 756 778 755 778 0.89 6 23 0.0048 0.41 11.5 0.1 3 23 799 820 797 820 0.96 7 23 0.0059 0.51 11.2 3.5 1 23 826 849 826 849 0.95 8 23 0.079 6.8 7.7 0.0 1 23 875 898 875 898 0.90 9 23 0.0034 0.3 12.0 3.5 1 23 903 925 903 925 0.97 10 23 0.003 0.26 12.2 1.1 1 23 931 953 931 954 0.95 11 23 0.0015 0.13 13.2 1.3 1 23 968 990 968 990 0.97 12 23 0.00011 0.0096 16.7 1.8 1 23 1039 1062 1039 1062 0.97 13 23 0.003 0.26 12.2 1.7 1 23 1125 1148 1125 1148 0.96 14 23 0.00069 0.06 14.2 2.1 2 23 1172 1194 1171 1194 0.95 15 23 0.054 4.7 8.2 0.1 2 23 1200 1222 1199 1222 0.93 16 23 0.00051 0.044 14.6 0.4 1 23 1265 1287 1265 1287 0.98 17 23 0.00026 0.023 15.5 1.0 1 23 1296 1318 1296 1318 0.93 18 23 5.5e-05 0.0048 17.6 0.3 2 23 1416 1438 1416 1438 0.93 19 23 3.9e-07 3.3e-05 24.4 1.1 3 23 1445 1465 1444 1465 0.98 20 23 0.0073 0.63 11.0 0.1 3 23 1486 1506 1484 1507 0.94 21 23 0.076 6.5 7.8 0.0 1 23 1527 1549 1527 1549 0.97 22 23 0.0034 0.3 12.0 0.4 1 23 1555 1578 1555 1578 0.96 23 23 0.00016 0.014 16.2 0.4 1 23 1586 1609 1586 1609 0.96
Sequence Information
- Coding Sequence
- ATGCGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGGCCTCGCGTCAAAAATCAGGAAATGCGTGTCTGTAGAGATAAACGAAGATGACGACCTGCCAACTAATGTTTGCAGAAAATGCTGTGACAATGTCAATAACTGGCACATTTTTAAAGATGTATGTGAAAGGTCACAAAACAAACTACAGAGACTCATTAAAAACGATGGCAGCCAACTAGAAGAGGTGCAAATTAAAAGTGAACCTTTATCTGATGAGGCTTATGATGATGGAGTGGTTATTGAAGGATCATACCCTGACCTTGAGTGTGCATCAACATCAAGTAAAGTACAACCAGAAGGTCCTCCTATCTTGGCTTCACTGGGTCTCACACCGAGGAGTGATAAGGGTATGGACAGCGAAAATAATGAGGAAGAAGATGAAGAAATGAATGAAGAGATGAATGAGTCTGCTCAACAATATCCGGGCGTGCCCGCTATGCCCGAGGTGTCCATCACTGTGATGCGCCCCACAGGAGAGACGCTGCACGCTCGCCAAGGGATACAACAACTCGCGTCCAAAGAGTGCCTCGTTTGCGGACGATTTTACAGATATTCACATAACGCCAGGCGACATGAACTTAACGCTCACAGTTTTGACAGATACACTAACAAAGTAACCAACAAGAAATCTCACAATACACACATGCAGCCGAAACTTAGACCCAATCCGTTCAATCCCAAAGCGAGGCTGATGCCTAATCCTATTAGCCATAAAATGCAGTTGATCCCTAAAGGGATTAATGCAAAAATCATACAGAACAAGTCTGGCGCCCCAGCCAAACCTATACCAATTAAAACACCAAAGGGAACCCAAAATAATTTGCCATACCCGCTTCGTATTAAGGCATTAAAAGATTTACAGATAAAGAAAAAGGAACCACAAATCCTTAAGACTCTGTTGACAACGAAACCTGAAGTTTTGGTATCCGAACCGGAAATTCTTAATTCTGGTCCAGAAAGTCCGGAGACTTTGATATCTGAACCAGAAATAGCATCGTTCCAAGTAGAGACTATCCTTTCGGAACCGGATACATATATGCCACAAGATGATGATGATGTCGATGGTGAAATGCAAAATAATCAAGGTCATAATTATGATACCGTTGACATGGACTCCGAAAATGAGATTGAGATAGCTCGTCAAAACGAAAACGTCGAAGGTGATGGGGATGGCGAAGGTGAAGGGGATGGTGATGGGGATGGCGATGGTGAAGGTGGTGTGGGTGAACATTTGGTCATTAACGAAAGGATGGAAGGTAATGAAATGAATAATGACGATGAAAATAACATGGAAAGAAATCAAAGCGACAATGAAAATGATCACGCTGATGACAATGCCGATAGCCAGGATGGGTTACAAATCGACAACGAGAATGATGGCAGAGACGAAGATTATGAGAATGGACATGAAACCAAAGAAGGCGAAGAGGGTATTGATGAACGAGACGATGAACAAATGGAATACAATCAAGATGACGATGATGAGGAACTGCCACCTATAGCACCCGTTGTCGAAATCAACGAAGACATGCAGACAAATTCGTACATCAGTGAAGGAAACGATGAAGATCTCGACGAAACCGCTGACCCTAACGACACAGCGGAGGACAACAAAGAACTCGACCCTGATAAGCTATATGTGACAAAGACGCAGCGAGATTTTATACAAAAATATCGCGATATAATCGAACAGATTAATACAAAAAGATGCCTCTGTTGTGATAGGGAACATCCTCGCCGCAAAGCTGTCATACAACATTTGCAGAAAAATGGACACAAAGTCCCCAAACACACGTGCTACAACTGCGTTGTTACCTTTGGCCATATTGGCGCTCTGCTCAGTCACATGCGCTCCAATACTTGCACAGATCTTTGGAAGATTATTTACAATGAAAATGGCATCACCGAAGATTTAGTTTTGGAGGACGAACCTAAAGATACCAAAGTAGCCTATAAAGATATATTTAATGCTAGGTCTTATGCTTGCAAATTATGTCCGGCTAAATTCCAATTGAAACAGTTTATAATGAAACATGTTCTGGACGTGCATGAAGATGGCCAGTCTCGTGTACAGCTCGTCTGCGTCCACTGCAACTCGAGATTCAAAGATAAGGCGTTGTGGAAGAGGCACATCCGTAACGGAGAATGTACCGTTTATATTTCATGCGATTTGTGTTCCGAAAGATTTGGCAATATGCAACATTTCAACGACCACGCATTAGCCGTACACGCCGGGAACTTCGACCAATCTGATAATCAGAACAAATGTGTCGACGGACGTCCTACCGATTGTCCAGTTTGTGGGAAGAAGAACAGTACCTATCCAAATTTAGTGAAACATTTAAAGATTATTCACAACGAGGAGAAACCTCATTACTGCCAGCATTGCGATTCTAAATTTGAACAAACTGCTGATCTAAATAAACACATCTATATGGAACATTCTGATAGAACATTAGGCGTGCAGAGCAACGAGCCCGACATGTCTCTCGTGAAGGAGGAAGCCGAGGAATACCACTACTCCTGCACAGAATGTAACGCCATATTCGAAACTGTCGACGCTTGGACGGATCATCAGGTGGCCGAACATAATCAAGTCGCTCACCATTGCGACCAATGCGACAAAAAATTTTTAAGGCCATCGGAACTGGCGGAGCACAAGAATACGCATTTGAGAGTTAAATTTTATCCTTGCAACATTTGTTCCAATTCGTACAGCACACCCCAAAAACTTTCAGAACACGTTCAGCAACACCATCCCGGAGCCGCGGGGGCGTATGCGCCCGTGGACTACGACTTCTTCTGCGACATCTGCATTCGGTCGTTCAAAAGCCGCCAGGCATACTCGAACCACATGCGCATACACGCCAAAGTGCCCACCACAAATAGAAAACCCGGAGAACCGAAAGGATTCGCTCCGCAAATTGTCGGTAAACCGATTAGGTCTTTCTCGATGGTACAACCCAATTTTCTTCCATTCAAACCCAATTGTAACGTCCCGAATGCGCCTTACTCCTGTGATATCTGCGGAAAAGGTTTCATGCACAAGAAAAATATTTGGAAGCACAAGAAAGTGCTACATGCAGACGCCGCGGAACGAAACGACAGCGAGGAGAACACCATGCAGGCCTCCACCGAAGAGGACGAATACAACTTAGACGAAAACGGAGCTATTCTGTCGACGCCGCAATTCAATAGTTTTAACTTTACTACTTTAGCAAACAACTTGCAGCAACAGGCCGCACAGCCCCCCCAGGATGCCACACCTTATTCTTGCGAATTGTGCTTCAAACGGTTTCCACTTAGAACAAGTTTATGGAAACACAAACGTGCTAAGCACGGAATCATCAACGCCAGCGCCAGCGGCAGCTCAGATTCACCAATAATGGCTGGAGAAGGCGGTAGATCGAGTTGCACTATATGTAAAATAACTTTTTCAGATAAAAAATCGTACTACCGTCACAGAAAGAATGTTCACAAATCCTCGGCGCAAATGTGCAAAATATGCGGAAAACCATTGAATTCTACATTAGAATTATACGAGCATCTGAAGGCCGCCCATGCCAGGGAATTACTCGGATATAACGCAAGTCAAGTTCCCACTAAACAGGAGTCTACACAAGAATTGGAAGGGGAATATGACGGTGACCAGGATTCGGTCGACCCCAGTGCGGAATATCAAGCCCGCTACCCGTGCGACAACTGCGGCAAACAATTCGTCGGCTTGCTCGCTTTACAGAACCACCAATGCATACACCAGTCACAATCATCTCCTCAGACTTTCGACTGTGAAATATGTCATAAGAGTTACACTTCTATTTCTGCGCTAAAGAGTCACCGCGGCTGGCATCTACGTTCCCCGGACGGCAAAGCGGCTGCCAATAATTCGGGGCTGTGGATGCCTCAGCATAAAGTTACCAGCAAGGTCAGTAAGCACGAGGTGGTCGACCCCTCGCAGCTCGCTCGCGTCACTCACTCGACGCCGACGCCGACACCGACGTCAACGCCCGCCAGCGTCGCTAAAAGAAGACTGCCGCCGGAAGTCGAGGTCACCGTCGTGAATCCCAACAAGAAGTTGCGTTCCGACGATTCCGTGGATTTGGAACAACAAAACAATTCCTCCACCGGGACCGACGACAGATACTGCAACATATGTGACAAGGAGTTCACCAAGCGAGCGGCCTACCAGCGGCACATGGACGAGGTGCACCAGCCCAACTCCGTGTTCTGTCCCGTCTGTGAGAAGAGCTTCACGCGCAAGTCAACGTTGATCGTCCACATGAAGAAACACTACGGAGGCGGTGAGGGCAGCTCCACCGGCGTCGACCAGAATGAAGATGACGGCCTCGCGTGCGACATTTGCGGGGCGCAGTACGATAATGAGAACGCTCTAAGAGCCCACCGAGCCATGCACCATGGTGATGATTCGGGTGAGTCGGAAGACGAGGGCAACAGCGCGCCGCCCCCGGGCGAGTTCACGTGCGGGCAGTGCGGGGACGGTGTGGCGACGCCGCGCGACCTCATCGCGCACCGCACTATGCACGCCACGCCTACCAAGTTCTACTGCAACATCTGTAAGGTGTACTTCGCACGCGCCATTGACCTATCATCACACACGCGCGCGCGTCACTCTGACAATGAGAAGGTGTTTTTCCCATGTGCGATGTGTGACAGGTTTTACATGAACAAGAAGAGTTTGCAGCGGCACATCGAGATGGCGCACTGA
- Protein Sequence
- MRVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPGLASKIRKCVSVEINEDDDLPTNVCRKCCDNVNNWHIFKDVCERSQNKLQRLIKNDGSQLEEVQIKSEPLSDEAYDDGVVIEGSYPDLECASTSSKVQPEGPPILASLGLTPRSDKGMDSENNEEEDEEMNEEMNESAQQYPGVPAMPEVSITVMRPTGETLHARQGIQQLASKECLVCGRFYRYSHNARRHELNAHSFDRYTNKVTNKKSHNTHMQPKLRPNPFNPKARLMPNPISHKMQLIPKGINAKIIQNKSGAPAKPIPIKTPKGTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEILNSGPESPETLISEPEIASFQVETILSEPDTYMPQDDDDVDGEMQNNQGHNYDTVDMDSENEIEIARQNENVEGDGDGEGEGDGDGDGDGEGGVGEHLVINERMEGNEMNNDDENNMERNQSDNENDHADDNADSQDGLQIDNENDGRDEDYENGHETKEGEEGIDERDDEQMEYNQDDDDEELPPIAPVVEINEDMQTNSYISEGNDEDLDETADPNDTAEDNKELDPDKLYVTKTQRDFIQKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITEDLVLEDEPKDTKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLVCVHCNSRFKDKALWKRHIRNGECTVYISCDLCSERFGNMQHFNDHALAVHAGNFDQSDNQNKCVDGRPTDCPVCGKKNSTYPNLVKHLKIIHNEEKPHYCQHCDSKFEQTADLNKHIYMEHSDRTLGVQSNEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCNICSNSYSTPQKLSEHVQQHHPGAAGAYAPVDYDFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGFAPQIVGKPIRSFSMVQPNFLPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADAAERNDSEENTMQASTEEDEYNLDENGAILSTPQFNSFNFTTLANNLQQQAAQPPQDATPYSCELCFKRFPLRTSLWKHKRAKHGIINASASGSSDSPIMAGEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQMCKICGKPLNSTLELYEHLKAAHARELLGYNASQVPTKQESTQELEGEYDGDQDSVDPSAEYQARYPCDNCGKQFVGLLALQNHQCIHQSQSSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVTHSTPTPTPTSTPASVAKRRLPPEVEVTVVNPNKKLRSDDSVDLEQQNNSSTGTDDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCEKSFTRKSTLIVHMKKHYGGGEGSSTGVDQNEDDGLACDICGAQYDNENALRAHRAMHHGDDSGESEDEGNSAPPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFYCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01155687;
- 90% Identity
- iTF_01140354;
- 80% Identity
- -