Pmac010751.1
Basic Information
- Insect
- Papilio machaon
- Gene Symbol
- -
- Assembly
- GCA_001298355.1
- Location
- NW:287388-289722[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.16 2.2e+03 -1.5 0.0 24 49 207 231 201 234 0.73 2 4 5.8e-05 0.79 9.5 1.7 21 48 231 258 225 262 0.88 3 4 3.4e-05 0.47 10.2 0.1 15 47 316 348 312 353 0.89 4 4 2.3e-05 0.32 10.8 0.2 22 46 351 375 348 379 0.90
Sequence Information
- Coding Sequence
- ATGAGCTATATTGATAAAAGGTGTAGAATTTGTCTTCAAGATGGAGCCTCGTATcctatttttgaaaaaattgagaatttcaaacataataaCATTCAATCTAAGATTTCAACTTGTTTGCATGTTAccGTTGAAGATGTAGAAGGATATCCGCgtcaaatatgtaataattgcAACGAAACTTTAGACATACTTTGGAAtttcataaatgtatttaaagagAGCTGCAAGGCATTAGAAAATAAGTtacttcatataaaaatagagaATGAATCTAGTAGTAATTATGACTCGGATTTTCATTCATCAGTTCACATTAAGGAGGAGTCTCCAGATCTTAGGGATTTGGATGAACAAACATCAATAACAACTCAAGTTAAGGTCATAAGTACacaaagtaaagaaaaaaaattggttaaaAAGGTGcctaacaaacaaaatgatgGAGACAAAAGGAATACAGTAGCATCTTCAATTTTAGAAGGTGAATTTACTTGGAGTGGAGAACAATGGTGtttaaataaaaaaaaagctgcCAAAACTGCAATCCAACAAACTAAAAGGAAATCACAgcaagtaaaaaagaaaaacactcCAAAGGAAAAGAAACCACCACCTCCTAAACTCTGTGATTTGTGCGGAGAAGTGTTTGAACAGGACAAACTAGTTGCACACATGAAAAGGGTCCATTTAAACAATCCCGCTAAATGTCCCGTATGTTCACGCATTTGTTCCtctgaatattatttaaatcgtcACATGCAAAGAAAACATCaagataataagaaatatcaGTGCAAATCTTGTGATAAGTCTTTTGCATTTGTTGGTGAATTGCGAAGTCATACTAGATATGTTCATGAGAAGATAAGAAGAACACCTCAAATATTCCCTTGTGATATGTGTGAAAgaacttttaaatgtatgcAATCACTTACAATACATAAACGATCTGTTCATACAGGGGAGCGACCTGAAACATGTTCTGTTTGTGGCGCCAGTTTCTACCACATTGTATATTTGAGAGAGCATATGCGACTCCATACAGGTGAAACTCCATACAAATGTCCTATTTGCGACCGGGGTTATGCACAAAGAGGAAATATGAGGAGTCACCTTCGGATCCACAGGAAGTCCGAGTTAGATGCTGCTACGTTGAGTAAAATAAAGCCAAGACTTCTTAGATTTCTTAAAGCTTAG
- Protein Sequence
- MSYIDKRCRICLQDGASYPIFEKIENFKHNNIQSKISTCLHVTVEDVEGYPRQICNNCNETLDILWNFINVFKESCKALENKLLHIKIENESSSNYDSDFHSSVHIKEESPDLRDLDEQTSITTQVKVISTQSKEKKLVKKVPNKQNDGDKRNTVASSILEGEFTWSGEQWCLNKKKAAKTAIQQTKRKSQQVKKKNTPKEKKPPPPKLCDLCGEVFEQDKLVAHMKRVHLNNPAKCPVCSRICSSEYYLNRHMQRKHQDNKKYQCKSCDKSFAFVGELRSHTRYVHEKIRRTPQIFPCDMCERTFKCMQSLTIHKRSVHTGERPETCSVCGASFYHIVYLREHMRLHTGETPYKCPICDRGYAQRGNMRSHLRIHRKSELDAATLSKIKPRLLRFLKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01149099;
- 90% Identity
- iTF_01144811; iTF_01148338;
- 80% Identity
- iTF_01144811;