Pmac008548.1
Basic Information
- Insect
- Papilio machaon
- Gene Symbol
- -
- Assembly
- GCA_001298355.1
- Location
- NW:336664-344815[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00094 0.05 13.7 0.1 2 23 201 222 200 222 0.96 2 12 0.00099 0.053 13.6 7.5 1 23 228 251 228 251 0.96 3 12 0.0041 0.22 11.7 0.9 1 23 265 287 265 287 0.98 4 12 0.0026 0.14 12.3 3.8 1 23 602 624 602 624 0.98 5 12 0.0045 0.24 11.6 1.6 3 23 631 652 629 652 0.96 6 12 0.00035 0.019 15.1 2.1 2 23 661 682 661 682 0.97 7 12 0.0046 0.24 11.6 1.1 2 23 686 707 685 707 0.96 8 12 0.0012 0.063 13.4 0.6 2 23 721 743 720 743 0.96 9 12 0.062 3.3 8.0 6.3 1 23 749 771 749 771 0.96 10 12 0.042 2.3 8.5 3.1 2 23 778 799 778 799 0.97 11 12 0.045 2.4 8.4 5.8 1 23 805 828 805 828 0.96 12 12 0.01 0.54 10.5 1.1 1 23 832 855 832 855 0.96
Sequence Information
- Coding Sequence
- ATGGAGCCAAAACTAACAAACACCGCGAGcctaaaaacatattctcgCTCGAAATGCTGGAAAGTTTCGAATCCTAAGGATACTAAAAGTGAACCTTTAACGACCAAAGAAGCTGTGAAGTATTTATTGCAAGGATCATTGAAGAGAAGGGTCTGTCGGTTTTGTCTAACTGCAACGACCTCTTTATCAGAATTGGATGAGATTTTAGAGGTGGCCAGTTCCGGGGCAATATTTCAAGTGACCATACGGGACATGGTAGCCAGTTTCTACCCATTTCAgGTATCTGATGACGCTAATTTCCCAAATAAAATCTGCGGCAAATGTCTAGATAAGACAATCAATTGTTACTTATTCACACAACAATGTGAAAGAGCCGAACGGGCAGTacgtaattgttttattgatatCAGTGAGAAATTCGATAAACTAGACCCCCTTGAACGGGTGAAGAGGAGGGGacgacaaaaattaaatcccAACCACAATATAATTcatgtagaacataaaaatgttattgattATGCAGatccaataataaatattgtaaatgctgGCTCATCACTCGTTACCAATAACAATGATGTTCAAATGAATGAACTAGAATGTCCAAGATGTTGGCAAGTGTTTACTAATGTAGAATCTCTCGTTAACCATGAGAAAATTCACCCTAAATCAATGTGGTACAATTGTAAACTCTGCggaaattcttttataaagcATTCACATTATAAAAAGCATATGAAACAGTTTCACTTTAAAGAAAACCCCAAAATAAATACGGAGAAGCAACAATTTCAATGCAACGAATGTGGTTTTATTTGTGAAGAGTTGGAgaattatttacaacatattGAAAAGCACAAGTTTAAGAATGTATTAGAATGTTTAGTTGAAAAGAAAACGGATAATTTGTGCGGAGTTTGTTTAGACAAAGGAGATACTATGACGAAATTGAACGAAACTTTATGTTTACATGGTGGATATCCAGAATTATCTGGAGAGATGACTGTGGCTACAATTTTAACTGCAACTATACCAGAGATGAATACAGTACATAACTACACTGGGACAAAAATATGCGAAAAATGCTTTAATCATGCATTAACATCGTATAtctttataagtaagattaaatatattagacATAGATTAAATACATGTATTAGTCTTATGTTAGATAACTTAAATAGAATAGATGAACCTGAAAACAACGTAATGGTAGAAATATCTATGGAAACAATCCTTCCTATAGCAGAAAAGAAGTCTTTAGAAGAAGAATACatagatgatgatgaatcgCAGATGAAAATCGAAGTATTGGAAGATGAATTTAGAATAGAATCAGAAAGTTCTGAACAAAGTTCAAAATCTGAAAATACTGATGATGAAGAAATTGGAACAGTGATATTTGATGATTTGAAGAAAATGCTTTATCCAGTCAATAAGGaaaggaataataaaaaagaagaaattataaatgacgAAACTAATAAATTAGTGAATGGATATCAGGATTATGAAGCCCTTTCGCCAGTAGGTAGTgatgttgaaaaattaatagctAGTGATGTTGAAAAATCAACATTAAGTGACTCAGAAGAATCAACAGAAagtgaaatagaaaaatctCCAAAAGCAAATGATGTTGAAAAATCACCTGAAAAATCTCCAATTGATATAGAAAAGTTAATAAGTGACGATGTTAATTTTGCAATGCAATCTCCACCAGTAAATGACATTTGCAGTGAATTcctaacatttaaaaagaaaccaaAACCTAAAAGAAAGTTGCGAAGACCGAATTTTACATGTCCTTTCTGTAGTAAACATTTCATCTCGGATTATTTCCTTAAGAATCATGTGTTGaaacatattaatacaaaaattaattgcaCAGTTTGCTATGAACCAGTTAAATCTAAATTCCATCTATTTGAACACatgaaaatgtttcatttagcTCACCAAAAAGATTATAACGTTTGTGATACATGCGGACGAAGTTTCACGGACatgaaaaagttttcattacaTAAAAGGACACATAAAATCAAAGTATGTCCATTATGTGACAAGTTGTTCAAATCTCAGAATACATTCGACATTCATTTCCAAAGACATGCAGGCAAATTCAATGGACGCAAAATTTCTAGGTCGCAAACTTGCAGTTTTTGCGAAAAAGAATTCACAAATGAAAATGAACTTTCACTACATGTGAATAagatacatttacaaattaaacctTACAGTTGTGATATGTGTGAGAAACGATTTTATACAGAACACAATTTGAGTTGTCACAAGAAAATACATGGTTTCAGATCTAAAGAGACTTGTGAATTTTGTAGTAAAATCTTCAAGTGTAGAAGAGATTTGGTCGCTCATGTTAGGAAACATATTGACATTAAACCTCATCATTGTCAAATATGTAGAGAAACATTTTACTCGGAAACGAGTCAACAAAATCATATGAAGAAAATGCATGGCGGTAGATATTGTTGTCGACTCTGCAAATCAGTGTTTAATAGGAAAGTGGACGTTAAAGCCCATGTCAATGTGGCTCATAATGCTATGTAG
- Protein Sequence
- MEPKLTNTASLKTYSRSKCWKVSNPKDTKSEPLTTKEAVKYLLQGSLKRRVCRFCLTATTSLSELDEILEVASSGAIFQVTIRDMVASFYPFQVSDDANFPNKICGKCLDKTINCYLFTQQCERAERAVRNCFIDISEKFDKLDPLERVKRRGRQKLNPNHNIIHVEHKNVIDYADPIINIVNAGSSLVTNNNDVQMNELECPRCWQVFTNVESLVNHEKIHPKSMWYNCKLCGNSFIKHSHYKKHMKQFHFKENPKINTEKQQFQCNECGFICEELENYLQHIEKHKFKNVLECLVEKKTDNLCGVCLDKGDTMTKLNETLCLHGGYPELSGEMTVATILTATIPEMNTVHNYTGTKICEKCFNHALTSYIFISKIKYIRHRLNTCISLMLDNLNRIDEPENNVMVEISMETILPIAEKKSLEEEYIDDDESQMKIEVLEDEFRIESESSEQSSKSENTDDEEIGTVIFDDLKKMLYPVNKERNNKKEEIINDETNKLVNGYQDYEALSPVGSDVEKLIASDVEKSTLSDSEESTESEIEKSPKANDVEKSPEKSPIDIEKLISDDVNFAMQSPPVNDICSEFLTFKKKPKPKRKLRRPNFTCPFCSKHFISDYFLKNHVLKHINTKINCTVCYEPVKSKFHLFEHMKMFHLAHQKDYNVCDTCGRSFTDMKKFSLHKRTHKIKVCPLCDKLFKSQNTFDIHFQRHAGKFNGRKISRSQTCSFCEKEFTNENELSLHVNKIHLQIKPYSCDMCEKRFYTEHNLSCHKKIHGFRSKETCEFCSKIFKCRRDLVAHVRKHIDIKPHHCQICRETFYSETSQQNHMKKMHGGRYCCRLCKSVFNRKVDVKAHVNVAHNAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01142629; iTF_01140446;
- 90% Identity
- -
- 80% Identity
- -