Pdar011695.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- -
- Assembly
- GCA_013186455.1
- Location
- QDHC01002967.1:32990-40187[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0096 0.76 10.4 0.0 2 23 200 221 199 221 0.96 2 12 0.00047 0.037 14.6 7.5 1 23 227 250 227 250 0.96 3 12 0.019 1.5 9.5 0.8 1 23 262 284 262 284 0.97 4 12 0.0024 0.19 12.3 3.8 1 23 599 621 599 621 0.98 5 12 0.00041 0.033 14.7 1.6 3 23 628 649 626 649 0.96 6 12 0.00049 0.039 14.5 1.1 3 23 659 679 658 679 0.98 7 12 0.0004 0.032 14.8 1.3 2 23 683 704 682 704 0.96 8 12 0.0021 0.16 12.5 0.8 2 23 718 740 717 740 0.96 9 12 0.00039 0.031 14.8 2.0 1 23 746 768 746 768 0.97 10 12 0.039 3.1 8.5 3.1 2 23 775 796 775 796 0.97 11 12 0.093 7.4 7.3 5.5 1 23 802 825 802 825 0.96 12 12 0.0018 0.14 12.7 1.3 1 23 829 852 829 852 0.96
Sequence Information
- Coding Sequence
- ATGGAGCCAAAAGTGACAAACACCGCGGCCCTAAAAACTTATTCTCGGTCCAAATGTTGGAAAGTTACGAATCCAAAGGATGTTAAAAGTGAACCTTTGTCTACAAAAGAAGCTGTGAAGTATTTGTTGCAAGGATCATTGAAGAGAAGGGTGTGTCGGTTTTGTCTATCAGCGACGACCTCCCTGTCAGAATTAGATGAGATTTTAGACGTAGGCAGTTCCGGGGCAATATTTCAAGTCACTATACGAGATATGGTAGCCAGTTTCTACCCATTTCAGGTATCAGATGACCCGAATTTCCCGAATAAAATCTGCGGCAAATGTCTAGATAGAACCatcaattgttatttattcacaCAACAGTGTGAACAAGCGGAACGAGCGATCCGTAACTGTTTTGTAGACATCAGTGAGAAATTCGATAAATTAGATCCAATCGAAAGAGTAAAGAGAAGAGGAAGACAGAAATTAAATCCTAACCATAATATAATACACGttgaacataaaaatgttatcaattaCGCAGaacctgtaataaatattgtgaatTGTGGTTCATCACTCGTAAACAACAGTGGAAATAAAATCAACGAATTAGAATGCCCTAAATGTTGGCAAGTCTTAACCAATGTAGAATCTCTAGTTAACCATGAGAAAATACATCCGAAATCCATGTGGTACAATTGCAAATACTGCGGTAATTCATTCGTAAAACATtcacattataaaaaacatataaaacaatatcacGGTAAAGAAAACACCGAGACGGATAAGCAACAGTTTCAATGCAAAGATTGTGATACTGTTTGTGAAGAATTAGATGTATATTTACAGCATATAGAAAAGCACAAGTTTAAGAACGTATTAGAACATTTAGTTGAGAGAAATATGGATAGTTTGTGCGGAGTTTGTTTGGGTAAAGGAGATAAAATGACGAAATTGGATGAAACTCTATCTCTGCACGGCGGATATCCTGAGTTATCCGGAGAAATGACTGTGGCTACAGTATTAACGACTACTATTCCAGAGATGAATACAGTTCATAACTACACTGGGACAAAAATATGCGAAAAATGCTTTAATCATGCATTAACAtcatatgtatttataaataagattagATATATTAGAAATAGATTGAATACGTGTATTAGTGTTATGTTAGACAGTTTAAATCGGATAGACGAACCCGAAAACAATATAATGGTTGAAATAGCTATGGAAACAATACTTCCTATAAGAGAAAAGAAATTAGCAAAAAATGAATACATCGACGATGAAGAAACTGACGAATCCCAGTTGAAAATAGAAGTACTAGAAGATGAATTTAGAATAAAATCAGAAAGTTCTGAAGAAGAAAGTATAAAATCTGAGGATACAGATGAGGAAGAAATTAGAACACTGATATTTGACGatttaaagaaaatgcttTATCCAGTAAAAACGGAAAAGGAGAAAGGAGTAAAGGAGGACGATTCTAAGACACTTATGAATGGATATCAGGATATTGAAGCCCGTTCAGTAGCTAGTGATGAAGAAAATACAATAGCTAGTCACATAGAAAAGTCATTATTAAGTGATTCAGAACAATCACAAGAAAGTGACTTAGAGAAATCTCCAAAAGCAAATGACATAGAAGAATCACTAGAAAAAACTCCAAGCGACATAGAACAGTTGAGTGACGTTAACTTTTCAACAGAAGACGTACAATCTCCCGGAAATGACATTTGCAGTGAATTCCtaacatttaataagaaaCCAAAACCTAAAAGAAAGTTCAGGAAACCGAATTTCACTTGTCCCTTCTGTAGCAAACATTTCATATCAGATTATTTCTTAAAGAATCATGTTTTGaaacatgttaataaaaaaattaattgtacCGTTTGCAACGAGCCGGTTAAATCTAAATTCCATCTTTTCGAACATATGAAAACGTATCATTTAGATTACCAAAAAGTTTATGAAGATTGTGAAATATGCGGACGAAGTTTCGAAAATtacaataagtttttattacataaaaagaCACATATGACAAAAGAATGTCCATTATGTGATAAATTTTTCATATCTCAGAGTACATTCGACAGTCACTTCCAAAGGCATGCGGAAAAATTCAATGGACTCAAAATTTCAAGGTCACAAACGTGCAGTTTTTGTGAAAAAGATTTCTCAAACGAAAATGAACTGTCACTACATGTGAATAAGTCACATTTGCAAATCAAACCATACAGTTGTGATATGTGCGAGAAACAGTTTTATACTGAACAGAATTTGAGTAGTCACAAGAAATTACATGGTTTTCGAAGTAAGGAGACTTGTGAATTTTGCAGTAAAATATTCAAGTGTAGAAGAGATTTGGTCGCTCATGTtagaaaacatattggtaTAAAACCTCACCATTGTCAGATATGTCGCGAATCTTTCTACTCGGAAATGACTCAACAGAATCATATGAAGAAAATGCATGGCGGTAGATACTGCTGTCGTCTCTGCAAGTCAGTATTTAACAGGAATATGGACCTTAAAGCACATGTTAATGTGGCTCATACTGCTATGTAG
- Protein Sequence
- MEPKVTNTAALKTYSRSKCWKVTNPKDVKSEPLSTKEAVKYLLQGSLKRRVCRFCLSATTSLSELDEILDVGSSGAIFQVTIRDMVASFYPFQVSDDPNFPNKICGKCLDRTINCYLFTQQCEQAERAIRNCFVDISEKFDKLDPIERVKRRGRQKLNPNHNIIHVEHKNVINYAEPVINIVNCGSSLVNNSGNKINELECPKCWQVLTNVESLVNHEKIHPKSMWYNCKYCGNSFVKHSHYKKHIKQYHGKENTETDKQQFQCKDCDTVCEELDVYLQHIEKHKFKNVLEHLVERNMDSLCGVCLGKGDKMTKLDETLSLHGGYPELSGEMTVATVLTTTIPEMNTVHNYTGTKICEKCFNHALTSYVFINKIRYIRNRLNTCISVMLDSLNRIDEPENNIMVEIAMETILPIREKKLAKNEYIDDEETDESQLKIEVLEDEFRIKSESSEEESIKSEDTDEEEIRTLIFDDLKKMLYPVKTEKEKGVKEDDSKTLMNGYQDIEARSVASDEENTIASHIEKSLLSDSEQSQESDLEKSPKANDIEESLEKTPSDIEQLSDVNFSTEDVQSPGNDICSEFLTFNKKPKPKRKFRKPNFTCPFCSKHFISDYFLKNHVLKHVNKKINCTVCNEPVKSKFHLFEHMKTYHLDYQKVYEDCEICGRSFENYNKFLLHKKTHMTKECPLCDKFFISQSTFDSHFQRHAEKFNGLKISRSQTCSFCEKDFSNENELSLHVNKSHLQIKPYSCDMCEKQFYTEQNLSSHKKLHGFRSKETCEFCSKIFKCRRDLVAHVRKHIGIKPHHCQICRESFYSEMTQQNHMKKMHGGRYCCRLCKSVFNRNMDLKAHVNVAHTAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01144846;
- 90% Identity
- -
- 80% Identity
- -