Pmac006110.1
Basic Information
- Insect
- Papilio machaon
- Gene Symbol
- JARID2
- Assembly
- GCA_001298355.1
- Location
- NW:1566949-1578077[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-19 3.9e-16 58.8 0.0 7 89 850 929 845 929 0.91 2 2 1.1 1.6e+03 -0.8 0.1 58 85 1013 1038 1000 1040 0.73
Sequence Information
- Coding Sequence
- atgaaaagAAGGAAAGTTCAAGCGCAACGAAAGTTTGCCCAAGGTGTATATATCCCACCAAGTACACAAACCACAAATATTGACAAAGTTACAAATCATACAATACAAAAGGACAATGAGATTAGAAGCAATATCTTTCACAGTAGCACTTCAGCTAAAAGTCTTCTTGACCTCATAAGCTTTCAAAATCTACATAAACATAGGGAACCTATCGTCTTGTTAGAGCGATTGCGACATTACCCAGAACAACTCCAAGCATCATCATCGGCAGCATCTCAACAATATACTATAAGtcaaatgaaaaaagtaaCTACAGCacttaaacataatatgtgcCTTCGATCTAAGAAAAAATTAGCCAAATTTGTTAAAAGGCTAAgaagcaaaaatattattataaaaaataaacggcAACCTAAGGTTACCAAAGATGTCTCAAGTTTAGAATCAATAGATTCTTGCAATGAAGATGACAAACCTTTAATGTACCTTGCCAAAGaggagaaaaataataaaatagtgaaCAAGACATTAAGTACTACTATTAGAGaaaaagAGAAGAAAGTAAGTTTTGACATTGGTCCCCATGAACATGTGGCATCTGATTCTTATGAACCACAACAAAAAAGTCGGCAACAGTACCCACACAGTCACAACTCTGCAAGACACAAAGATGGACTTACAAGACGATCAATAGTTCACACTCGGTCACATAGGAGGACTTCAATTGGTACTCGTGAATTTGAGGAAATTCCTCTGGGACCTGGTCGGCGACATCGCAGTCGATCCATGCTAAAAACAGATAGAGTGAAAAGACAGCGCTTGCGCACCCGCACGAGTCGACGGTCGGTGGCTGATGCCTGCCAATCAGACCATGGAGAGCTGCAGGGAAATGACGAATCTTCCTGTAGTACCTCACCACAGAAAATAGttTTAGATGAAACAAAAAGGAATGGTTTACAAACTCAGCGGCTTACTTCCCTTTCTGTTGATGATGCTTCTCTATCAAGACAGGAAGAACCGAAAAATGGACAACCACTTAGTGATAGCTTACTGCAAAATACAGaaaacaagATCAAGCATCCTGTTGATAAGGAAAAACCTCAGAAAATATGTAGCCAACCATCGACATCCAGCAGTAAATTAACCACAACTAaagACTCTCCGATAGCTGACATCAACACCACACCAAAGTCGTCAACATCTCTGCGTCTTCCTAAAAAAAGACCATCAAATTCAACACTAGAATCCTTAATACAATCTGCTTTAGGAGTCCAGCCAATTGTCAAAATTGAATCTCCAGCTCCTACCAGTCTTCTAGTTACTAACTTATCATCTAAACCATCTCCAGTCAAGTCTATAGTCACAAGTGAGGGACAACGGTCAAAATCTGAAAATTCTGATGCCAATATCAAACCAATAACTAGTTCTGATGTTACATCGAATTGTGCTGAACATAAAACAGTTTCAACTTCTCAAGcacATGCAGCTCCATTAgatgataacaatattaaacgGCCAACGGCtgagaaatatttaacagCACCGTTAATTTCTAGAAGGTTACGCAACATTCCTATcgataaaataactaaaacaaatcaggagaaaagaaatataacaaaaaagcAAATATCTAACACGGGAGAGCAATCTGAAGCTATCGATATatcatcaaaaattaaaaaccgtCGTATATATTGTCCATCTAAAAACTACTCAATTATGAATGATGTTGTTTATGCAGACCCTAAAGATTTGGTGAGCCGATGTGAAAGATGCGATTATTGTGCATTCGTCGACAAAGTACAGTGTGtatcaaatatgtttaaaatacaatactgTCGAAAGATTATACAATCAAAAATATACGGATTTGATGCTGAAGATGAGAAAACAGTGAAAAATGATTCCAATATACCAAGAACAAAGACCCGTCATGGGAATGAGACAAGTACTGAATGTGATACACaaacatgttatttaatttatgataaagATTCTGATCATGTTGTGGAAGTAAAAAGAACTCGGTATCCTAATCAGGTGACACGAATTGAAAGTGCTAATATTATCCCCAAGACATTGAATACTAAGATTATTACGGTTACTGCATTTGATAGTGATCAACTTTTAGATGATatcataaattttgttatatcaaaGAAGTCTAAcacaacagtggaaactcCCTCTGATTTCGTTAATGGATCTAAACATGGATCAGTCCAAAAGAACTCAAGTGCTTTTACCATAAATGGAGATAATAATGGTATTGAGGAAAAGAATTCAGCAGTACTTAAGCCGATGCTCAAAGCGAGTCAAACAGATGCACCGATCTTCCATCCTACAGAACAAGAATTCatgGACCCCATTGCttacttcaataaaattatgccAATCGCTGCGAAATTCGGTTTATGTAAAGTTGTCGCTCCGAATACTTTTAAACCCAAATGTATGTTAGATGATGAAGTTCGCTTTGAAGTGACGAACCAATACATATCTCGCCTGTACAAGCGATGGGGACCGGCCTCGAGAGAACTGTGTGCCATTAAAGCTTATTTAGCTTCCCAAAGTGTGATCTTCAGTCGGCCTCCTTTGCTCGAAGGGGTCGAGGTCAATTTACcgaagttatattatttagtacaaaCTCTGGGCGGCCTCAAAGAAGTAATCGAAAAGAAGCGCTGGACTAAAGTAGCTGAAGAAATGAACCTTTCCAAAACGCCAAAAATCGAAGTGAAATTGGAtcaaatatatgttaaatatatattgccTTACGACACAATGACAGATGACGAGCGGAAAGATCTAATGAAAGCAGTTGATAAACACTGGAGTAAGAAACACCGCAAAATGCTACAACGTGCTATGAAGCCATTACATAGACAGAAACGTCTTCTAGACGAATCTGAATCATCTGAAGAAGATATCGATGAAGATATTTATGTATCCGGAGCATTGGCCGAAGCGGAGGACTGTATCAGCAATGGCAGGCAAATGAATCtgcttacttttaaaaagGTGGCAAGTAAATGTAAGGAAATGTACATTCCAAATAGTAATCAGAATACTCAGACTGATATAGAACAAATATATTGGAAAATGGTTCTTCTTGCGCAAGATCACATTTGTGTGAATAACGCATCAATCGACACCGGCGAGGAGGGATATGGTTTCACTAAAGACCAACGAGACACTTATGGGAAACATCCATGGAATTTAAAGgTCCTTAGTCAGAATAGTGGGAATGTCCTTAGATTCTTAGGACCAGTACTGGGTGTGACAGTTCCCACTTTGCATCTTGGGATGGTCTTCTCAACCAGCTGTTGGCATAGAGATCCCCACGGTCTACCCTGGATCGAATACATGCACACCGGACCCGGAAAAATTTgGTATGGCATTCCGGATGAACAAAGTGACAATTTCCGGAGAGCAGTAGAACTGCTGTGCCCGACATCATGTCAAAACAAATCGATTTGGCTTCCGTCCGATATCACAATGATCCCACCGGACCTGCTCTTGCAGAATAATGTATCTATGTCTAGAGTAGTTCAAGAGCCGGGTCAGTTTATTGTGGTTTTTCCAAAGGCATATTCATGTTCCATTGCAACTGGATACACTGAATCTGAGAGTGTATATTTTGCAACAAATTCATGGTTGGAAACAATAGATCAAGTGTTTCAAgAAGTACGCGAAAGCTGCGAACCTACAATGTTCTCGCTGGAACATTTGCTGGTGTCTGCTGCGCGAGACTCGCGTGCGTCCACTGAGGTCCTCAAACTGGTCAATGTTCTCCTCGGGAAGATCATAAGGGAAGAGCTGAGTAACCGCACCGCCCTCGCCGCATACAAAATTCAGAACCAAAACccacaacaaaataaacattctcgCAAGCGGCCCGCAGGCGCGTGGAATGTTCGAGATCAAGACGAGTGTGAGATCTGTCAAGCGACCTTGTACCTCTCCAAAGTGAGAGGATTGACAGACAAGAAGCGGTCGGTGTGCCTCCAGCACGCCCTGCAGTTACTCGATGTAAAGAACAGGGAATGTGACTTGACCAGCGTTGAGCTTGAATTATTCTTTTCTGATgcagaattagaaaaaattatgacaaaaatcaaaactcgtatttaa
- Protein Sequence
- MKRRKVQAQRKFAQGVYIPPSTQTTNIDKVTNHTIQKDNEIRSNIFHSSTSAKSLLDLISFQNLHKHREPIVLLERLRHYPEQLQASSSAASQQYTISQMKKVTTALKHNMCLRSKKKLAKFVKRLRSKNIIIKNKRQPKVTKDVSSLESIDSCNEDDKPLMYLAKEEKNNKIVNKTLSTTIREKEKKVSFDIGPHEHVASDSYEPQQKSRQQYPHSHNSARHKDGLTRRSIVHTRSHRRTSIGTREFEEIPLGPGRRHRSRSMLKTDRVKRQRLRTRTSRRSVADACQSDHGELQGNDESSCSTSPQKIVLDETKRNGLQTQRLTSLSVDDASLSRQEEPKNGQPLSDSLLQNTENKIKHPVDKEKPQKICSQPSTSSSKLTTTKDSPIADINTTPKSSTSLRLPKKRPSNSTLESLIQSALGVQPIVKIESPAPTSLLVTNLSSKPSPVKSIVTSEGQRSKSENSDANIKPITSSDVTSNCAEHKTVSTSQAHAAPLDDNNIKRPTAEKYLTAPLISRRLRNIPIDKITKTNQEKRNITKKQISNTGEQSEAIDISSKIKNRRIYCPSKNYSIMNDVVYADPKDLVSRCERCDYCAFVDKVQCVSNMFKIQYCRKIIQSKIYGFDAEDEKTVKNDSNIPRTKTRHGNETSTECDTQTCYLIYDKDSDHVVEVKRTRYPNQVTRIESANIIPKTLNTKIITVTAFDSDQLLDDIINFVISKKSNTTVETPSDFVNGSKHGSVQKNSSAFTINGDNNGIEEKNSAVLKPMLKASQTDAPIFHPTEQEFMDPIAYFNKIMPIAAKFGLCKVVAPNTFKPKCMLDDEVRFEVTNQYISRLYKRWGPASRELCAIKAYLASQSVIFSRPPLLEGVEVNLPKLYYLVQTLGGLKEVIEKKRWTKVAEEMNLSKTPKIEVKLDQIYVKYILPYDTMTDDERKDLMKAVDKHWSKKHRKMLQRAMKPLHRQKRLLDESESSEEDIDEDIYVSGALAEAEDCISNGRQMNLLTFKKVASKCKEMYIPNSNQNTQTDIEQIYWKMVLLAQDHICVNNASIDTGEEGYGFTKDQRDTYGKHPWNLKVLSQNSGNVLRFLGPVLGVTVPTLHLGMVFSTSCWHRDPHGLPWIEYMHTGPGKIWYGIPDEQSDNFRRAVELLCPTSCQNKSIWLPSDITMIPPDLLLQNNVSMSRVVQEPGQFIVVFPKAYSCSIATGYTESESVYFATNSWLETIDQVFQEVRESCEPTMFSLEHLLVSAARDSRASTEVLKLVNVLLGKIIREELSNRTALAAYKIQNQNPQQNKHSRKRPAGAWNVRDQDECEICQATLYLSKVRGLTDKKRSVCLQHALQLLDVKNRECDLTSVELELFFSDAELEKIMTKIKTRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01147891;
- 90% Identity
- -
- 80% Identity
- -